HCSGD entry for VPS13A
1. General information
| Official gene symbol | VPS13A |
|---|---|
| Entrez ID | 23230 |
| Gene full name | vacuolar protein sorting 13 homolog A (S. cerevisiae) |
| Other gene symbols | CHAC CHOREIN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | NAS | cellular_component |
| GO:0006895 | Golgi to endosome transport | NAS | biological_process |
| GO:0007399 | Nervous system development | IEA | biological_process |
| GO:0007626 | Locomotory behavior | IEA | biological_process |
| GO:0008104 | Protein localization | NAS | biological_process |
| GO:0008219 | Cell death | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0031045 | Dense core granule | IEA | cellular_component |
| GO:0035176 | Social behavior | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2860649823 | 0.2095080088 | 0.9854098155 | 0.8847579926 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.0706648820 |
| GSE13712_SHEAR | Down | -0.0255037369 |
| GSE13712_STATIC | Up | 0.4128842263 |
| GSE19018 | Up | 0.0148612820 |
| GSE19899_A1 | Up | 0.1013527281 |
| GSE19899_A2 | Down | -0.5365589159 |
| PubMed_21979375_A1 | Up | 0.0748622015 |
| PubMed_21979375_A2 | Down | -0.2349189172 |
| GSE35957 | Up | 0.3750045182 |
| GSE36640 | Down | -0.6678377144 |
| GSE54402 | Down | -0.1498982432 |
| GSE9593 | Down | -0.1905355598 |
| GSE43922 | Up | 0.0701668570 |
| GSE24585 | Down | -0.1336852456 |
| GSE37065 | Up | 0.1535262430 |
| GSE28863_A1 | Up | 0.5102431595 |
| GSE28863_A2 | Up | 0.6110551543 |
| GSE28863_A3 | Down | -0.2267301311 |
| GSE28863_A4 | Up | 0.2122422577 |
| GSE48662 | Up | 0.0625113549 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-21-5p | MIMAT0000076 | MIRT030908 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-15b-5p | MIMAT0000417 | MIRT046430 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
