HCSGD entry for RFTN1
1. General information
| Official gene symbol | RFTN1 |
|---|---|
| Entrez ID | 23180 |
| Gene full name | raftlin, lipid raft linker 1 |
| Other gene symbols | PIB10 PIG9 RAFTLIN |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003725 | Double-stranded RNA binding | IDA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0033227 | DsRNA transport | IMP | biological_process |
| GO:0034138 | Toll-like receptor 3 signaling pathway | IMP | biological_process |
| GO:0043234 | Protein complex | IDA | cellular_component |
| GO:0043330 | Response to exogenous dsRNA | IMP | biological_process |
| GO:0045121 | Membrane raft | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9517444664 | 0.0740922457 | 0.9999902473 | 0.5133520927 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2842444680 |
| GSE13712_SHEAR | Up | 0.0277565656 |
| GSE13712_STATIC | Down | -0.0323850078 |
| GSE19018 | Down | -0.1816087964 |
| GSE19899_A1 | Down | -0.2080698256 |
| GSE19899_A2 | Down | -0.0208578994 |
| PubMed_21979375_A1 | Up | 0.1008674517 |
| PubMed_21979375_A2 | Up | 0.0704875228 |
| GSE35957 | Up | 0.0870178808 |
| GSE36640 | Up | 0.3755225401 |
| GSE54402 | Down | -0.2368474109 |
| GSE9593 | Up | 0.1327150530 |
| GSE43922 | Down | -0.0352942735 |
| GSE24585 | Down | -0.3887533425 |
| GSE37065 | Down | -0.1030009620 |
| GSE28863_A1 | Up | 0.0075028443 |
| GSE28863_A2 | Down | -0.6323261572 |
| GSE28863_A3 | Down | -0.2738624459 |
| GSE28863_A4 | Down | -0.1414724202 |
| GSE48662 | Up | 0.0986181662 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-484 | MIMAT0002174 | MIRT041930 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
