HCSGD entry for RRP1B
1. General information
| Official gene symbol | RRP1B |
|---|---|
| Entrez ID | 23076 |
| Gene full name | ribosomal RNA processing 1 homolog B (S. cerevisiae) |
| Other gene symbols | KIAA0179 NNP1L Nnp1 RRP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000791 | Euchromatin | IEA | cellular_component |
| GO:0000792 | Heterochromatin | IEA | cellular_component |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005829 | Cytosol | IDA | cellular_component |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0010923 | Negative regulation of phosphatase activity | IDA | biological_process |
| GO:0030688 | Preribosome, small subunit precursor | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2015801261 | 0.2901664982 | 0.8661101045 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0091958922 |
| GSE13712_SHEAR | Down | -0.3331325337 |
| GSE13712_STATIC | Up | 0.0160484226 |
| GSE19018 | Down | -0.3630486501 |
| GSE19899_A1 | Up | 0.3883668565 |
| GSE19899_A2 | Up | 0.5430952614 |
| PubMed_21979375_A1 | Up | 0.7878121302 |
| PubMed_21979375_A2 | Up | 0.6411093440 |
| GSE35957 | Down | -0.0268239890 |
| GSE36640 | Down | -0.4346665828 |
| GSE54402 | Up | 0.2030007441 |
| GSE9593 | Down | -0.1326943677 |
| GSE43922 | Up | 0.6547593364 |
| GSE24585 | Down | -0.6671311443 |
| GSE37065 | Down | -0.1121428722 |
| GSE28863_A1 | Up | 0.1516409692 |
| GSE28863_A2 | Up | 0.1112589131 |
| GSE28863_A3 | Down | -0.2965340323 |
| GSE28863_A4 | Up | 0.1059509102 |
| GSE48662 | Down | -0.5403701160 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT005231 | pSILAC//Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT025330 | Proteomics | Functional MTI (Weak) | 21566225 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027588 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-1296-5p | MIMAT0005794 | MIRT036131 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-940 | MIMAT0004983 | MIRT036605 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037837 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040297 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-505-3p | MIMAT0002876 | MIRT041010 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042232 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-196b-5p | MIMAT0001080 | MIRT042696 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-331-3p | MIMAT0000760 | MIRT043565 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045276 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-125a-5p | MIMAT0000443 | MIRT045704 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047655 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
