HCSGD entry for PDZRN3
1. General information
| Official gene symbol | PDZRN3 |
|---|---|
| Entrez ID | 23024 |
| Gene full name | PDZ domain containing ring finger 3 |
| Other gene symbols | LNX3 SEMACAP3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004842 | Ubiquitin-protein ligase activity | IEA ISS | molecular_function |
| GO:0007528 | Neuromuscular junction development | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016567 | Protein ubiquitination | ISS | biological_process |
| GO:0031594 | Neuromuscular junction | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2417646366 | 0.1353393944 | 0.9288540470 | 0.7095787692 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2792571410 |
| GSE13712_SHEAR | Down | -0.2188118232 |
| GSE13712_STATIC | Down | -0.0821749885 |
| GSE19018 | Down | -0.0092957585 |
| GSE19899_A1 | Down | -0.0716917026 |
| GSE19899_A2 | Up | 0.1197364502 |
| PubMed_21979375_A1 | Up | 0.7066171714 |
| PubMed_21979375_A2 | Down | -0.3604167035 |
| GSE35957 | Up | 0.1047500453 |
| GSE36640 | Up | 0.0929512721 |
| GSE54402 | Down | -0.3383870653 |
| GSE9593 | Down | -0.1964432886 |
| GSE43922 | Down | -0.3016090167 |
| GSE24585 | Down | -0.2693007021 |
| GSE37065 | Up | 0.3017970275 |
| GSE28863_A1 | Up | 1.0841109145 |
| GSE28863_A2 | Up | 0.4999946324 |
| GSE28863_A3 | Up | 0.0926018566 |
| GSE28863_A4 | Down | -0.3683487066 |
| GSE48662 | Down | -0.4022527432 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-197-3p | MIMAT0000227 | MIRT048113 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
