HCSGD entry for HMGXB3
1. General information
| Official gene symbol | HMGXB3 |
|---|---|
| Entrez ID | 22993 |
| Gene full name | HMG box domain containing 3 |
| Other gene symbols | HMGX3 SMF |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0008152 | Metabolic process | NAS | biological_process |
| GO:0016301 | Kinase activity | NAS | molecular_function |
| GO:0016310 | Phosphorylation | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0101673189 | 0.9188273204 | 0.2568272553 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0982049226 |
| GSE13712_SHEAR | Down | -0.0267150529 |
| GSE13712_STATIC | Up | 0.0200976103 |
| GSE19018 | Down | -0.3481971554 |
| GSE19899_A1 | Up | 0.3552996072 |
| GSE19899_A2 | Up | 0.6194652769 |
| PubMed_21979375_A1 | Up | 1.3310513850 |
| PubMed_21979375_A2 | Up | 1.5486978866 |
| GSE35957 | Down | -0.2795876352 |
| GSE36640 | Down | -0.0544647464 |
| GSE54402 | Up | 1.2043619107 |
| GSE9593 | Down | -0.0286366523 |
| GSE43922 | Up | 0.8392752563 |
| GSE24585 | Up | 0.1484772838 |
| GSE37065 | Up | 0.1845351430 |
| GSE28863_A1 | Up | 0.5431358317 |
| GSE28863_A2 | Up | 0.7100139545 |
| GSE28863_A3 | Down | -0.3840956020 |
| GSE28863_A4 | Down | -0.3322242005 |
| GSE48662 | Up | 0.0877659040 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-454-3p | MIMAT0003885 | MIRT039237 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040316 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT041726 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043043 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049848 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
