HCSGD entry for PDCD11
1. General information
| Official gene symbol | PDCD11 |
|---|---|
| Entrez ID | 22984 |
| Gene full name | programmed cell death 11 |
| Other gene symbols | ALG-4 ALG4 NFBP RRP5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IEA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008134 | Transcription factor binding | IPI | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0273877664 | 0.7882336499 | 0.3838810969 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1317718403 |
| GSE13712_SHEAR | Up | 0.3088576871 |
| GSE13712_STATIC | Up | 0.1492955395 |
| GSE19018 | Down | -0.5036869945 |
| GSE19899_A1 | Up | 0.2796752837 |
| GSE19899_A2 | Up | 0.8399884267 |
| PubMed_21979375_A1 | Up | 1.8558086500 |
| PubMed_21979375_A2 | Up | 0.8325537987 |
| GSE35957 | Down | -0.2991861777 |
| GSE36640 | Down | -0.2068097690 |
| GSE54402 | Up | 0.4187560382 |
| GSE9593 | Down | -0.2493141617 |
| GSE43922 | Up | 0.4682967036 |
| GSE24585 | Down | -0.5449088939 |
| GSE37065 | Down | -0.1182803757 |
| GSE28863_A1 | Up | 0.3851178196 |
| GSE28863_A2 | Up | 0.0334695862 |
| GSE28863_A3 | Up | 0.2474666712 |
| GSE28863_A4 | Up | 0.1060123987 |
| GSE48662 | Up | 0.0315390430 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027547 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032267 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032267 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320b | MIMAT0005792 | MIRT036204 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-361-3p | MIMAT0004682 | MIRT038273 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040145 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-3p | MIMAT0000071 | MIRT050784 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051587 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-4286 | MIMAT0016916 | MIRT052845 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
