HCSGD entry for FOXD4

1. General information

Official gene symbolFOXD4
Entrez ID2298
Gene full nameforkhead box D4
Other gene symbolsFKHL9 FOXD4A FREAC-5 FREAC5
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000122Negative regulation of transcription from RNA polymerase II promoterIBAbiological_process
GO:0001658Branching involved in ureteric bud morphogenesisIBAbiological_process
GO:0001755Neural crest cell migrationIBAbiological_process
GO:0001822Kidney developmentIBAbiological_process
GO:0003690Double-stranded DNA bindingIBAmolecular_function
GO:0003700Sequence-specific DNA binding transcription factor activityTASmolecular_function
GO:0003705RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activityIBAmolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005667Transcription factor complexIBAcellular_component
GO:0005730NucleolusIDAcellular_component
GO:0006366Transcription from RNA polymerase II promoterIBAbiological_process
GO:0007389Pattern specification processIBAbiological_process
GO:0007422Peripheral nervous system developmentIBAbiological_process
GO:0008134Transcription factor bindingIBAmolecular_function
GO:0008301DNA binding, bendingIBA ISSmolecular_function
GO:0009790Embryo developmentIBAbiological_process
GO:0030318Melanocyte differentiationIBAbiological_process
GO:0043565Sequence-specific DNA bindingISSmolecular_function
GO:0045944Positive regulation of transcription from RNA polymerase II promoterIBAbiological_process
GO:0048484Enteric nervous system developmentIBAbiological_process
GO:0048485Sympathetic nervous system developmentIBAbiological_process
GO:0048846Axon extension involved in axon guidanceIBAbiological_process
GO:0048937Lateral line nerve glial cell developmentIBAbiological_process
GO:0050935Iridophore differentiationIBAbiological_process
GO:0051090Regulation of sequence-specific DNA binding transcription factor activityIBAbiological_process
GO:0051216Cartilage developmentIBAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.80816201510.83487320010.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0537297626
GSE13712_SHEARDown-0.1605323570
GSE13712_STATICDown-0.0051704722
GSE19018Up0.0913789374
GSE19899_A1Up0.2345602133
GSE19899_A2Up0.0186386083
PubMed_21979375_A1Down-0.0698099916
PubMed_21979375_A2Down-0.0067777036
GSE35957Down-0.1682275165
GSE36640Down-0.0228634728
GSE54402Down-0.0564689375
GSE9593Up0.1740432367
GSE43922--
GSE24585--
GSE37065--
GSE28863_A1--
GSE28863_A2--
GSE28863_A3--
GSE28863_A4--
GSE48662Up0.0663801464

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.