HCSGD entry for RUFY3
1. General information
| Official gene symbol | RUFY3 |
|---|---|
| Entrez ID | 22902 |
| Gene full name | RUN and FYVE domain containing 3 |
| Other gene symbols | RIPX SINGAR1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0030175 | Filopodium | IEA ISS | cellular_component |
| GO:0030426 | Growth cone | IEA ISS | cellular_component |
| GO:0050771 | Negative regulation of axonogenesis | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9442277193 | 0.0470666426 | 0.9999902473 | 0.4072009859 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0179389860 |
| GSE13712_SHEAR | Up | 0.0255454375 |
| GSE13712_STATIC | Down | -0.0631162637 |
| GSE19018 | Down | -0.1855996059 |
| GSE19899_A1 | Down | -0.2257759227 |
| GSE19899_A2 | Down | -0.9921712773 |
| PubMed_21979375_A1 | Down | -1.2426511927 |
| PubMed_21979375_A2 | Down | -0.5950165753 |
| GSE35957 | Down | -0.0772475336 |
| GSE36640 | Up | 0.0350274807 |
| GSE54402 | Down | -0.3935982559 |
| GSE9593 | Up | 0.3608283678 |
| GSE43922 | Down | -0.7289172278 |
| GSE24585 | Up | 0.2885642052 |
| GSE37065 | Down | -0.0439877715 |
| GSE28863_A1 | Up | 0.0853307529 |
| GSE28863_A2 | Down | -0.0712047856 |
| GSE28863_A3 | Down | -0.0104924337 |
| GSE28863_A4 | Down | -0.1573151711 |
| GSE48662 | Up | 0.0910154172 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022964 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024652 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026779 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030979 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-505-3p | MIMAT0002876 | MIRT041031 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
