HCSGD entry for RPH3A
1. General information
| Official gene symbol | RPH3A |
|---|---|
| Entrez ID | 22895 |
| Gene full name | rabphilin 3A homolog (mouse) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005215 | Transporter activity | IEA | molecular_function |
| GO:0005509 | Calcium ion binding | ISS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005544 | Calcium-dependent phospholipid binding | ISS | molecular_function |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0008021 | Synaptic vesicle | IEA | cellular_component |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0017137 | Rab GTPase binding | IEA | molecular_function |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3940973975 | 0.8069576878 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0910476983 |
| GSE13712_SHEAR | Down | -0.1009561976 |
| GSE13712_STATIC | Up | 0.1694024930 |
| GSE19018 | Up | 0.3048403868 |
| GSE19899_A1 | Up | 0.1837424609 |
| GSE19899_A2 | Down | -0.4540245367 |
| PubMed_21979375_A1 | Down | -0.0274259652 |
| PubMed_21979375_A2 | Down | -0.1928877369 |
| GSE35957 | Up | 0.3234709118 |
| GSE36640 | Up | 0.0797361182 |
| GSE54402 | Down | -0.0678339513 |
| GSE9593 | Up | 0.1100859968 |
| GSE43922 | Up | 0.1616703689 |
| GSE24585 | Up | 0.0196071979 |
| GSE37065 | Down | -0.1051877359 |
| GSE28863_A1 | Down | -0.0535737373 |
| GSE28863_A2 | Down | -0.0884443607 |
| GSE28863_A3 | Up | 0.3323333324 |
| GSE28863_A4 | Up | 0.1410256781 |
| GSE48662 | Up | 0.1364992257 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-106a-5p | MIMAT0000103 | MIRT048316 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
