HCSGD entry for CLSTN1
1. General information
| Official gene symbol | CLSTN1 |
|---|---|
| Entrez ID | 22883 |
| Gene full name | calsyntenin 1 |
| Other gene symbols | ALC-ALPHA CDHR12 CSTN1 PIK3CD XB31alpha alcalpha1 alcalpha2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0042995 | Cell projection | IEA | cellular_component |
| GO:0045211 | Postsynaptic membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0330759014 | 0.1843104707 | 0.4186675481 | 0.8326872468 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.7050740374 |
| GSE13712_SHEAR | Down | -0.1231018544 |
| GSE13712_STATIC | Up | 0.0850409681 |
| GSE19018 | Up | 0.6243512088 |
| GSE19899_A1 | Down | -0.4029862807 |
| GSE19899_A2 | Up | 0.3401887343 |
| PubMed_21979375_A1 | Down | -0.0949183999 |
| PubMed_21979375_A2 | Up | 1.1861438844 |
| GSE35957 | Down | -0.4433491325 |
| GSE36640 | Up | 0.5454294093 |
| GSE54402 | Down | -0.3357118469 |
| GSE9593 | Down | -0.0737821297 |
| GSE43922 | Up | 0.0744718204 |
| GSE24585 | Up | 0.3953897752 |
| GSE37065 | Down | -0.0056871507 |
| GSE28863_A1 | Up | 0.9372139252 |
| GSE28863_A2 | Up | 1.1178414817 |
| GSE28863_A3 | Down | -0.2956904974 |
| GSE28863_A4 | Down | -0.3721843017 |
| GSE48662 | Up | 0.1939738086 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016329 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024919 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026222 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT028868 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-455-3p | MIMAT0004784 | MIRT037817 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-423-5p | MIMAT0004748 | MIRT038086 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30e-3p | MIMAT0000693 | MIRT044121 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30a-3p | MIMAT0000088 | MIRT049924 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
