HCSGD entry for FNDC3A
1. General information
| Official gene symbol | FNDC3A |
|---|---|
| Entrez ID | 22862 |
| Gene full name | fibronectin type III domain containing 3A |
| Other gene symbols | FNDC3 HUGO bA203I16.1 bA203I16.5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0001669 | Acrosomal vesicle | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0007286 | Spermatid development | IEA | biological_process |
| GO:0009566 | Fertilization | IEA | biological_process |
| GO:0012506 | Vesicle membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016337 | Cell-cell adhesion | IEA | biological_process |
| GO:0060009 | Sertoli cell development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4164565670 | 0.2352846472 | 0.9999902473 | 0.9333725998 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0766531319 |
| GSE13712_SHEAR | Up | 0.0708727193 |
| GSE13712_STATIC | Up | 0.1452635462 |
| GSE19018 | Down | -0.1135156852 |
| GSE19899_A1 | Down | -0.1628766287 |
| GSE19899_A2 | Down | -0.5123013356 |
| PubMed_21979375_A1 | Up | 0.5246467312 |
| PubMed_21979375_A2 | Down | -0.3352962853 |
| GSE35957 | Up | 0.1439730109 |
| GSE36640 | Down | -0.6877334953 |
| GSE54402 | Down | -0.4067950979 |
| GSE9593 | Up | 0.0422972266 |
| GSE43922 | Down | -0.0000603730 |
| GSE24585 | Up | 0.4283492269 |
| GSE37065 | Up | 0.4752576585 |
| GSE28863_A1 | Up | 0.1623785695 |
| GSE28863_A2 | Up | 0.1598571009 |
| GSE28863_A3 | Down | -0.7954390211 |
| GSE28863_A4 | Up | 0.3676848294 |
| GSE48662 | Down | -0.1484482182 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT001631 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-1 | MIMAT0000416 | MIRT023556 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-1 | MIMAT0000416 | MIRT023556 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027515 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT037084 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052386 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
