HCSGD entry for SCAF8
1. General information
| Official gene symbol | SCAF8 |
|---|---|
| Entrez ID | 22828 |
| Gene full name | SR-related CTD-associated factor 8 |
| Other gene symbols | RBM16 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0016363 | Nuclear matrix | ISS | cellular_component |
| GO:0043175 | RNA polymerase core enzyme binding | IPI | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9681186543 | 0.1106247825 | 0.9999902473 | 0.6368667760 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2419070305 |
| GSE13712_SHEAR | Up | 0.2353343814 |
| GSE13712_STATIC | Up | 0.0406751601 |
| GSE19018 | Down | -0.3515540216 |
| GSE19899_A1 | Down | -0.1797216342 |
| GSE19899_A2 | Down | -0.1530469285 |
| PubMed_21979375_A1 | Down | -0.5698238361 |
| PubMed_21979375_A2 | Up | 0.1547707222 |
| GSE35957 | Up | 0.1818714130 |
| GSE36640 | Down | -0.4234935094 |
| GSE54402 | Down | -0.1324866611 |
| GSE9593 | Down | -0.0415491473 |
| GSE43922 | Down | -0.2697475393 |
| GSE24585 | Up | 0.0984063011 |
| GSE37065 | Up | 0.0328634035 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.4071915813 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-877-3p | MIMAT0004950 | MIRT037053 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-29b-3p | MIMAT0000100 | MIRT048359 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049583 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052039 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
