HCSGD entry for SEMA3D
1. General information
| Official gene symbol | SEMA3D |
|---|---|
| Entrez ID | 223117 |
| Gene full name | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D |
| Other gene symbols | Sema-Z2 coll-2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004872 | Receptor activity | IEA | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0007399 | Nervous system development | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0030154 | Cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9725383382 | 0.0297141256 | 0.9999902473 | 0.3260961667 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0520968154 |
| GSE13712_SHEAR | Down | -0.1313240847 |
| GSE13712_STATIC | Up | 0.0154684356 |
| GSE19018 | Down | -0.1886786611 |
| GSE19899_A1 | Up | 0.0270471773 |
| GSE19899_A2 | Down | -0.0531126273 |
| PubMed_21979375_A1 | Down | -0.1394909698 |
| PubMed_21979375_A2 | Down | -0.1910265572 |
| GSE35957 | Up | 0.1486516737 |
| GSE36640 | Down | -0.3717214602 |
| GSE54402 | Down | -0.1994046396 |
| GSE9593 | Down | -0.0521361891 |
| GSE43922 | Down | -1.7362583720 |
| GSE24585 | Down | -0.6313675284 |
| GSE37065 | Down | -0.0252509869 |
| GSE28863_A1 | Up | 0.2952700144 |
| GSE28863_A2 | Down | -0.5141054781 |
| GSE28863_A3 | Down | -0.3816078146 |
| GSE28863_A4 | Down | -0.1458188293 |
| GSE48662 | Up | 0.0326520242 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193a-3p | MIMAT0000459 | MIRT044883 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
