HCSGD entry for C9orf72
1. General information
| Official gene symbol | C9orf72 |
|---|---|
| Entrez ID | 203228 |
| Gene full name | chromosome 9 open reading frame 72 |
| Other gene symbols | ALSFTD FTDALS |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0008219 | Cell death | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0094455454 | 0.3090587022 | 0.2488650651 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6074955889 |
| GSE13712_SHEAR | Down | -0.2080785302 |
| GSE13712_STATIC | Up | 0.0697208496 |
| GSE19018 | Up | 0.1581787751 |
| GSE19899_A1 | Up | 0.3650210121 |
| GSE19899_A2 | Up | 1.3672200076 |
| PubMed_21979375_A1 | Up | 2.2677441619 |
| PubMed_21979375_A2 | Up | 1.9415041210 |
| GSE35957 | Down | -0.6217506695 |
| GSE36640 | Down | -0.1465140250 |
| GSE54402 | Up | 1.4649207479 |
| GSE9593 | Down | -0.1307527291 |
| GSE43922 | Up | 1.1369160406 |
| GSE24585 | Down | -0.3515851898 |
| GSE37065 | Up | 0.4169113400 |
| GSE28863_A1 | Down | -0.4215397181 |
| GSE28863_A2 | Down | -0.1892786708 |
| GSE28863_A3 | Down | -0.7753901032 |
| GSE28863_A4 | Down | -0.0848851033 |
| GSE48662 | Down | -0.2162642538 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-142-3p | MIMAT0000434 | MIRT021644 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
