HCSGD entry for APOBEC3F

1. General information

Official gene symbolAPOBEC3F
Entrez ID200316
Gene full nameapolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
Other gene symbolsA3F ARP8 BK150C2.4.MRNA KA6
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000932Cytoplasmic mRNA processing bodyIDAcellular_component
GO:0002230Positive regulation of defense response to virus by hostIDAbiological_process
GO:0003723RNA bindingIDAmolecular_function
GO:0004126Cytidine deaminase activityIDAmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIDAcellular_component
GO:0008270Zinc ion bindingIDAmolecular_function
GO:0009972Cytidine deaminationIDAbiological_process
GO:0010529Negative regulation of transpositionIDAbiological_process
GO:0016553Base conversion or substitution editingIDAbiological_process
GO:0030529Ribonucleoprotein complexIDAcellular_component
GO:0030895Apolipoprotein B mRNA editing enzyme complexTAScellular_component
GO:0045071Negative regulation of viral genome replicationIDAbiological_process
GO:0045087Innate immune responseIDAbiological_process
GO:0045869Negative regulation of single stranded viral RNA replication via double stranded DNA intermediateIDAbiological_process
GO:0048525Negative regulation of viral processIDAbiological_process
GO:0051607Defense response to virusIDAbiological_process
GO:0070383DNA cytosine deaminationIDAbiological_process
GO:0080111DNA demethylationIDAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.35947097750.19481391280.99999024730.8553733167

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0132143613
GSE13712_SHEARDown-0.0332832290
GSE13712_STATICUp0.1846566752
GSE19018Up0.2174908522
GSE19899_A1Up0.0046472386
GSE19899_A2Down-0.1642913795
PubMed_21979375_A1Down-0.7608213410
PubMed_21979375_A2Down-0.3059987223
GSE35957Down-0.0579755624
GSE36640Up0.1493902826
GSE54402Down-0.2924844441
GSE9593Up0.2355724657
GSE43922Down-1.1355304539
GSE24585Up0.4268131728
GSE37065Up0.4807957726
GSE28863_A1Down-0.3795780571
GSE28863_A2Down-0.0404541449
GSE28863_A3Down-0.1060059314
GSE28863_A4Up0.2621247883
GSE48662Up0.5169702788

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.