HCSGD entry for ZNF48
1. General information
| Official gene symbol | ZNF48 |
|---|---|
| Entrez ID | 197407 |
| Gene full name | zinc finger protein 48 |
| Other gene symbols | ZNF553 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9201604612 | 0.0860925763 | 0.9999902473 | 0.5575172897 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2214173866 |
| GSE13712_SHEAR | Down | -0.7220105530 |
| GSE13712_STATIC | Down | -0.5693295068 |
| GSE19018 | Down | -0.1868213821 |
| GSE19899_A1 | Down | -0.1124552603 |
| GSE19899_A2 | Down | -0.0119786066 |
| PubMed_21979375_A1 | Down | -0.4766201724 |
| PubMed_21979375_A2 | Down | -0.0176858761 |
| GSE35957 | Up | 0.1156269266 |
| GSE36640 | Up | 0.2723758365 |
| GSE54402 | Up | 0.2824959287 |
| GSE9593 | Up | 0.3205048925 |
| GSE43922 | Up | 0.0267254436 |
| GSE24585 | Down | -0.4945665637 |
| GSE37065 | Down | -0.0866107641 |
| GSE28863_A1 | Down | -0.1489041328 |
| GSE28863_A2 | Up | 0.0046828770 |
| GSE28863_A3 | Up | 0.0575511714 |
| GSE28863_A4 | Down | -0.0908225721 |
| GSE48662 | Down | -0.0604010934 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023873 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-766-3p | MIMAT0003888 | MIRT039013 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042355 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
