HCSGD entry for SDR16C5
1. General information
| Official gene symbol | SDR16C5 |
|---|---|
| Entrez ID | 195814 |
| Gene full name | short chain dehydrogenase/reductase family 16C, member 5 |
| Other gene symbols | RDH#2 RDH-E2 RDHE2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004745 | Retinol dehydrogenase activity | IDA | molecular_function |
| GO:0005789 | Endoplasmic reticulum membrane | IDA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016491 | Oxidoreductase activity | IEA | molecular_function |
| GO:0042572 | Retinol metabolic process | IDA IEA | biological_process |
| GO:0042574 | Retinal metabolic process | IDA | biological_process |
| GO:0043616 | Keratinocyte proliferation | IMP | biological_process |
| GO:0050908 | Detection of light stimulus involved in visual perception | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6759274686 | 0.7960709699 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0790996423 |
| GSE13712_SHEAR | Up | 0.0564178776 |
| GSE13712_STATIC | Down | -0.1076176095 |
| GSE19018 | Up | 0.1531189824 |
| GSE19899_A1 | Up | 0.1831055029 |
| GSE19899_A2 | Up | 0.1601669179 |
| PubMed_21979375_A1 | Down | -0.0693413286 |
| PubMed_21979375_A2 | Up | 0.0660235398 |
| GSE35957 | Up | 0.0081346708 |
| GSE36640 | Up | 0.0875748555 |
| GSE54402 | Down | -0.0529328818 |
| GSE9593 | Up | 0.0821783568 |
| GSE43922 | Down | -0.0347082750 |
| GSE24585 | Down | -0.0821729099 |
| GSE37065 | Down | -0.0688069457 |
| GSE28863_A1 | Down | -0.1379481394 |
| GSE28863_A2 | Down | -0.0211182778 |
| GSE28863_A3 | Up | 0.2185324003 |
| GSE28863_A4 | Up | 0.0164726294 |
| GSE48662 | Down | -0.1118433486 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018359 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
