HCSGD entry for E2F1


1. General information

Official gene symbolE2F1
Entrez ID1869
Gene full nameE2F transcription factor 1
Other gene symbolsE2F-1 RBAP1 RBBP3 RBP3
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000077DNA damage checkpointIMPbiological_process
GO:0000080Mitotic G1 phaseTASbiological_process
GO:0000082G1/S transition of mitotic cell cycleTASbiological_process
GO:0000085Mitotic G2 phaseTASbiological_process
GO:0000122Negative regulation of transcription from RNA polymerase II promoterIMPbiological_process
GO:0000278Mitotic cell cycleTASbiological_process
GO:0001047Core promoter bindingIDAmolecular_function
GO:0003677DNA bindingIDA IMPmolecular_function
GO:0003700Sequence-specific DNA binding transcription factor activityIDA TASmolecular_function
GO:0003714Transcription corepressor activityTASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0005737CytoplasmIEAcellular_component
GO:0006351Transcription, DNA-templatedIEAbiological_process
GO:0006355Regulation of transcription, DNA-templatedIDAbiological_process
GO:0007283SpermatogenesisIEAbiological_process
GO:0008134Transcription factor bindingIPImolecular_function
GO:0008283Cell proliferationTASbiological_process
GO:0008630Intrinsic apoptotic signaling pathway in response to DNA damageIMPbiological_process
GO:0010628Positive regulation of gene expressionIDAbiological_process
GO:0030900Forebrain developmentIEAbiological_process
GO:0035189Rb-E2F complexIDAcellular_component
GO:0043276AnoikisIEAbiological_process
GO:0043565Sequence-specific DNA bindingIEAmolecular_function
GO:0045892Negative regulation of transcription, DNA-templatedIMPbiological_process
GO:0045893Positive regulation of transcription, DNA-templatedIMPbiological_process
GO:0045944Positive regulation of transcription from RNA polymerase II promoterIMPbiological_process
GO:0048146Positive regulation of fibroblast proliferationIMPbiological_process
GO:0048255MRNA stabilizationIDAbiological_process
GO:0071398Cellular response to fatty acidIEAbiological_process
GO:0071456Cellular response to hypoxiaIEAbiological_process
GO:0071930Negative regulation of transcription involved in G1/S transition of mitotic cell cycleIMPbiological_process
GO:0072332Intrinsic apoptotic signaling pathway by p53 class mediatorIEAbiological_process
GO:1990086Lens fiber cell apoptotic processIEAbiological_process
GO:2000045Regulation of G1/S transition of mitotic cell cycleIMPbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.97823788610.01771048210.99999024730.2607145414

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.1304928466
GSE13712_SHEARDown-0.0108976141
GSE13712_STATICUp0.0177832581
GSE19018Up0.0219826298
GSE19899_A1Down-0.1581753789
GSE19899_A2Down-0.1159045215
PubMed_21979375_A1Down-1.0422937916
PubMed_21979375_A2Down-0.3788859203
GSE35957Down-0.5055339736
GSE36640Down-1.8893710366
GSE54402Down-0.2882849509
GSE9593Down-0.2797548628
GSE43922Up0.0425220538
GSE24585Down-0.0434422071
GSE37065Down-0.3865568917
GSE28863_A1Down-0.2096005063
GSE28863_A2Up0.2359552749
GSE28863_A3Up0.3019484407
GSE28863_A4Down-0.0675317413
GSE48662Down-1.3905921393

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-20a-5pMIMAT0000075MIRT000180Western blotFunctional MTI19110058
hsa-miR-20a-5pMIMAT0000075MIRT000180Western blotFunctional MTI18025036
hsa-miR-20a-5pMIMAT0000075MIRT000180Western blotFunctional MTI18836483
hsa-miR-20a-5pMIMAT0000075MIRT000180Luciferase reporter assay//Northern blot//Western blot//Reporter assayFunctional MTI15944709
hsa-miR-20a-5pMIMAT0000075MIRT000180Luciferase reporter assayFunctional MTI21283765
hsa-miR-106a-5pMIMAT0000103MIRT000374Immunohistochemistry//Microarray//Western blotFunctional MTI20643754
hsa-miR-106a-5pMIMAT0000103MIRT000374qRT-PCRFunctional MTI (Weak)18521848
hsa-miR-106a-5pMIMAT0000103MIRT000374Luciferase reporter assay//Western blotFunctional MTI21656380
hsa-miR-223-3pMIMAT0000280MIRT000632Luciferase reporter assay//Western blotFunctional MTI20029046
hsa-miR-330-3pMIMAT0000751MIRT000718Luciferase reporter assay//Western blotFunctional MTI19597470
hsa-miR-98-5pMIMAT0000096MIRT001124Luciferase reporter assayNon-Functional MTI19528081
hsa-miR-21-5pMIMAT0000076MIRT001191qRT-PCR//Western blotFunctional MTI19906824
hsa-miR-21-5pMIMAT0000076MIRT001191Luciferase reporter assayNon-Functional MTI19528081
hsa-miR-93-5pMIMAT0000093MIRT002472Luciferase reporter assay//Western blotFunctional MTI19486339
hsa-miR-93-5pMIMAT0000093MIRT002472Luciferase reporter assay//Microarray//Western blotFunctional MTI18328430
hsa-miR-93-5pMIMAT0000093MIRT002472SequencingFunctional MTI (Weak)20371350
hsa-miR-17-5pMIMAT0000070MIRT002935qRT-PCRFunctional MTI (Weak)18521848
hsa-miR-17-5pMIMAT0000070MIRT002935Western blotFunctional MTI18836483
hsa-miR-17-5pMIMAT0000070MIRT002935Luciferase reporter assay//Northern blot//Western blot//Reporter assayFunctional MTI15944709
hsa-miR-17-5pMIMAT0000070MIRT002935Northern blot//qRT-PCR//Western blotFunctional MTI16940181
hsa-miR-17-5pMIMAT0000070MIRT002935Luciferase reporter assayFunctional MTI21283765
hsa-miR-106b-5pMIMAT0000680MIRT003045Luciferase reporter assay//qRT-PCRFunctional MTI18676839
hsa-miR-106b-5pMIMAT0000680MIRT003045Luciferase reporter assay//Western blotFunctional MTI19486339
hsa-miR-106b-5pMIMAT0000680MIRT003045Luciferase reporter assay//Microarray//Western blotFunctional MTI18328430
hsa-miR-106b-5pMIMAT0000680MIRT003045Luciferase reporter assayFunctional MTI21283765
hsa-miR-106b-5pMIMAT0000680MIRT003045Reporter assayFunctional MTI18212054
hsa-miR-205-5pMIMAT0000266MIRT003322Luciferase reporter assay//qRT-PCR//Western blotFunctional MTI22578566
hsa-miR-205-5pMIMAT0000266MIRT003322Reporter assayFunctional MTI21454583
hsa-miR-23b-3pMIMAT0000418MIRT003424flow//MicroarrayFunctional MTI (Weak)20133741
hsa-let-7a-5pMIMAT0000062MIRT003904Western blotNon-Functional MTI19110058
hsa-miR-34a-5pMIMAT0000255MIRT004821Immunoblot//Immunohistochemistry//qRT-PCRFunctional MTI (Weak)17875987
hsa-miR-34a-5pMIMAT0000255MIRT004821Western blotNon-Functional MTI21128241
hsa-miR-126-3pMIMAT0000445MIRT005020qRT-PCRNon-Functional MTI (Weak)18521848
hsa-miR-149-3pMIMAT0004609MIRT005356Luciferase reporter assay//qRT-PCR//Western blot//Reporter assay;Western blot;qRT-PCR;OtherFunctional MTI20623644
hsa-miR-331-3pMIMAT0000760MIRT006506Luciferase reporter assay//Western blotFunctional MTI20510161
hsa-miR-362-3pMIMAT0004683MIRT007349Western blotFunctional MTI23280316
hsa-miR-193b-3pMIMAT0002819MIRT016529MicroarrayFunctional MTI (Weak)20304954
hsa-miR-130b-3pMIMAT0000691MIRT020292SequencingFunctional MTI (Weak)20371350
hsa-miR-24-3pMIMAT0000080MIRT030626qRT-PCRFunctional MTI (Weak)19748357
hsa-miR-181b-5pMIMAT0000257MIRT035553Luciferase reporter assay//Western blotFunctional MTI23083446
hsa-miR-181b-5pMIMAT0000257MIRT035553CLASHFunctional MTI (Weak)23622248
hsa-miR-10a-5pMIMAT0000253MIRT047521CLASHFunctional MTI (Weak)23622248
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  • mirRecord

MicroRNA name

mirBase ID

Target site number

MiRNA mature ID

Test method inter

MiRNA regulation site

Reporter target site

Pubmed ID

hsa-miR-21-5pMIMAT0000076NAhsa-miR-21{Western blot}{overexpression by miRNA precursor transfection}19906824
hsa-miR-330-3pMIMAT00007511hsa-miR-330-3p{Western blot}{overexpression by miRNA precursor transfection}19597470
hsa-miR-106b-5pMIMAT0000680NAhsa-miR-106b{Western blot}{overexpression by miRNA mimics tranfection}19486339
hsa-miR-93-5pMIMAT0000093NAhsa-miR-93{Western blot}{overexpression by miRNA mimics tranfection}19486339
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6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: 39 abstracts the gene occurs.


PubMed ID of the article

Sentenece the gene occurs

27362652Targets of miR-34 miRNAs, including E2F1, c-Myc, and cyclin E2, were lower in IPF type II AECs
26873092We found that circ-Foxo3 was mainly distributed in the cytoplasm, where it interacted with the anti-senescent protein ID-1 and the transcription factor E2F1, as well as the anti-stress proteins FAK and HIF1alpha
26873092CONCLUSION: We conclude that ID-1, E2F1, FAK, and HIF1alpha interact with circ-Foxo3 and are retained in the cytoplasm and could no longer exert their anti-senescent and anti-stress roles, resulting in increased cellular senescence
26505814Depletion of NML reduced the levels of H3K9Me3 and H3K27Me3 heterochromatin markers on rDNA and E2F1 target promoters in senescent cells, increased rRNA transcription, and increased the frequency of cell cycle re-entry
25344604E2F1 and FOXO3 are two transcription factors that have been shown to participate in cellular senescence
25344604Here we use E2F1 knock-out murine Embryonic fibroblasts (MEFs), knockdown RNAi constructs, and ectopic expression of E2F1 to show that it functions by negatively regulating FOXO3
25344604Here we use E2F1 knock-out murine Embryonic fibroblasts (MEFs), knockdown RNAi constructs, and ectopic expression of E2F1 to show that it functions by negatively regulating FOXO3
25344604We mapped the interaction between E2F1 and FOXO3 to a region including the DNA binding domain of E2F1 and the C-terminal transcription-activation domain of FOXO3
25344604We mapped the interaction between E2F1 and FOXO3 to a region including the DNA binding domain of E2F1 and the C-terminal transcription-activation domain of FOXO3
25344604We propose that E2F1 inhibits FOXO3-dependent transcription by directly binding FOXO3 in the nucleus and preventing activation of its target genes
25344604Moreover, knockdown of the Caenorhabditis elegans E2F1 ortholog efl-1 significantly extends lifespan in a manner that requires the activity of the C
25344604We conclude that there is an evolutionarily conserved signaling connection between E2F1 and FOXO3, which regulates cellular senescence and aging by regulating the activity of FOXO3
25216853Using interphase FISH (iFISH) suggests that the androgen-induced cellular senescence is associated with localizing the genomic E2F1 locus to senescence associated heterochromatic foci
24913980Reactive oxygen species ligand upregulation occurs at transcriptional levels and requires the transcriptional factor E2F1
24913980Drug-induced MICA and PVR gene expression are transcriptionally regulated and involve DDR-dependent E2F1 transcription factor activity
24322375Analysis of expression levels of p53, p21(CIP1), p16(INK4a), p27(KIP1), pRb and E2F1 and genetic knockdown of p21(CIP1) demonstrated an important role of p21(CIP1) in RD-triggered cellular senescence
24122992The cells treated with Doxorubicin (0-500 nm) or vehicle control were analyzed for apoptosis, senescence (SA-beta Galactosidase), and expression of CDKN1A (p21), CDKN1B(p27), CDKN2A (p16), E2F1, vimentin and E-cadherin by immuno-histochemistry and/or Western blot
24122992CONCLUSION: The absence of functional p16, pRB and p53 in DU145 suggests that Id4 could alter additional molecular pathways such as those involving E2F1 to promote senescence and increased sensitivity to doxorubicin-induced apoptosis
23868058E2F1 in renal cancer: Mr Hyde disguised as Dr Jekyll
23868058The transcription factor E2F1 has both oncogenic and tumour suppressor properties, depending on the context
23868058Clarifying the function of E2F1 in different types of cancer is relevant because in those situations in which it acts as an oncogene there may be a route for therapeutic interference
23868058This malignancy represents a challenge for standard therapies due to drug- and radio-resistance, effects that fit well within the scope of functions of E2F1
23868058A new report by Mans et al postulates that up-regulation of E2F1 in VHL-defective renal cell carcinoma induces cell senescence and can thus be considered a good prognostic factor
23868058Here we discuss these findings in a wider context and propose that E2F1 may actually not play a uniform role in renal cell carcinoma but rather an ambiguous one whose deeper understanding could have practical implications
23744542Regulation of E2F1 by the von Hippel-Lindau tumour suppressor protein predicts survival in renal cell cancer patients
23744542We report that the VHL gene product (pVHL) inhibits E2F1 expression at both mRNA and protein level in zebrafish and human RCC cells, while loss of VHL increases E2F1 expression in patient kidney tumour tissue and RCC cells, resulting in a delay of cell cycle progression
23744542We report that the VHL gene product (pVHL) inhibits E2F1 expression at both mRNA and protein level in zebrafish and human RCC cells, while loss of VHL increases E2F1 expression in patient kidney tumour tissue and RCC cells, resulting in a delay of cell cycle progression
23744542RCCs from von Hippel-Lindau patients with known germline VHL mutations express significantly more E2F1 compared to sporadic RCCs with either clear-cell (cc) or non-cc histology
23744542Analysis of 138 primary RCCs reveals that E2F1 expression is significantly higher in tumours with a diameter
23744542Cox regression analysis shows significant prediction of E2F1 expression for disease-free survival and overall survival, implying that E2F1 expression in kidney tumour is a novel prognostic factor for patients with RCC
23744542Cox regression analysis shows significant prediction of E2F1 expression for disease-free survival and overall survival, implying that E2F1 expression in kidney tumour is a novel prognostic factor for patients with RCC
22955272The retinoblastoma protein selectively represses E2F1 targets via a TAAC DNA element during cellular senescence
22955272The retinoblastoma (Rb) protein mediates heterochromatin formation at the promoters of E2 transcription factor 1 (E2F1) target genes, such as proliferating cell nuclear antigen and cyclin A2 (CCNA2), and represses these genes during cellular senescence
22955272Here, we demonstrate that a senescence-associated gene is a direct target of E2F1 and is also repressed by heterochromatin in senescent cells
22955272In contrast, ARF and p27(KIP1), which are also E2F1 targets, are not repressed by Rb and heterochromatin formation
22955272We further determined that TAAC element-mediated Rb association requires the E2F1 binding site, but not E2F1 protein
22955272We further determined that TAAC element-mediated Rb association requires the E2F1 binding site, but not E2F1 protein
22955272These results provide a novel molecular mechanism for the different expression patterns of E2F1 targets and afford new mechanistic insight regarding the selectivity of Rb-mediated heterochromatin formation and gene repression during cellular senescence
22025288Rb is maintained in a hypophosphorylated state resulting in the inhibition of transcription factor E2F1
22020331BTG3 also binds and inhibits E2F1
25961265Furthermore, NaBu down-regulates the proto-oncogenes c-Myc, Cyclin D1 and E2F1 mRNA levels
21223585These responses were accompanied by the up-regulation of the cell cycle inhibitor p21 WAF1 and reduced ERK phosphorylation and E2F1 expression
19656618Down-regulation of p16(INK4a) expression by HBx subsequently led to activation of G(1)-CDKs, phosphorylation of Rb, activation of E2F1, and finally evasion from G(1) arrest induced by H(2)O(2)
19436740In contrast, DRIL1 sumoylation impairs its interaction with E2F1 in vitro and modifies its transcriptional activity in vivo, driving transcription of subset of genes regulating leukocyte fate
19034270Furthermore, we show that these miRNAs silence antiproliferative genes, which themselves are E2F1 targets
18567801E2F1 small interfering RNA expression reduced hMSH2 expression and MMR activity in young human primary fibroblast cells
18567801Importantly, expression of E2F1 in quiescent cells restored the MSH2 expression as well as MMR activity, whereas E2F1-infected senescent cells exhibited no restoration of MSH2 expression and MMR activity
18567801These results indicate that the suppression of E2F1 transcriptional activity in senescent cells lead to stable repression of MSH2, followed by a induction of MutS alpha dysfunction, which results in a reduced cellular MMR capacity in senescent cells
17968325Furthermore, such inactivation inhibits p53 but not E2F1 transcriptional activity and impairs DNA-damage-induced transcription of p21
17100598Studies in the past decade have clearly established a role for the retinoblastoma tumor suppressor protein, Rb, and its primary downstream target E2F1, in the above processes
16596252E2F-1 is a critical modulator of cellular senescence in human cancer
16596252Herein we show that E2F1, a transcription factor essential to a cell cycle progress and a main target of tumor suppressor Rb, is a critical barrier for the induction of senescence
16596252Consistent with the notion of the critical role in senescence of E2F1, cells which overexpressed E2F1 proved to be immune to the induction of senescence
16596252Consistent with the notion of the critical role in senescence of E2F1, cells which overexpressed E2F1 proved to be immune to the induction of senescence
16596252Importantly, it appears that E2F1 depletion-induced cancer cell senescence is not reliant on the integrity of either Rb or p53
16596252Our results provide a molecular explanation for the selectivity with which senescence induction occurs, and also provides insights into the possibility of using E2F1 as a therapeutic target in the treatment of cancer
16107878C/EBPbeta was unable to inhibit proliferation of MEFs lacking all three RB family proteins or wild-type cells expressing dominant negative E2F-1 and, instead, stimulated their growth
15811427In addition, cells in these two states exhibited quite distinct time course profiles of the proteins, p53, p21WAF1, and E2F1
12902982Activation of E2F1 induced p14ARF mRNA and protein levels
12507899Induction of p14(ARF) on confluency occurred with low E2F-1 levels
12362892Among them, activated p53 family proteins suppress the function of NF-Y and thereby downregulate a set of cell cycle-related genes, including E2F1, which further leads to downregulation of E2F-regulated genes and cell cycle arrest
11791184A pRb immunoprecipitation demonstrated more binding of E2F-1 to pRb in the high expressing IGFBP-rP1/mac25 clones than in control cells
11640890Expression by recombinant adenovirus of E2F1, E2F2, E2F3, cyclin E/cdk2, and Mdm2 individually resulted in DNA synthesis in 10-30% of cells
11302695Recent studies show that young cells can be induced to develop features of senescence prematurely by damaging agents, chromatin remodeling, and overexpression of ras or the E2F1 gene
10911949Melanin accumulation accelerates melanocyte senescence by a mechanism involving p16INK4a/CDK4/pRB and E2F1
10911949Here we demonstrate that in melanocytes derived from dark-skinned individuals, CT-induced melanogenesis is associated with accumulation of the tumor suppressor p16INK4a, underphosphorylated retinoblastoma protein (pRb), downregulation of cyclin E, decreased expression of E2F1, and loss of E2F-regulated S-phase gene expression
10911949This delayed senescence may result from reduced association of p16 with CDK4, reduced levels of underphosphorylated pRb, and steady levels of cyclin E and E2F1
10585280Here we present evidence that activation of a cAMP pathway correlates with multiple cellular changes in these cells: (1) increased expression of the transcription factor microphthalmia; (2) increased melanogenesis; (3) increased association of the cyclin-dependent kinase inhibitors (CDK-Is) p27(KIP1) and p16(INK4) with CDK2 and CDK4, respectively; (4) failure to phosphorylate the retinoblastoma protein (pRB); (5) decreased expression of E2F1, E2F2, and E2F4 proteins; (6) loss of E2F DNA-binding activity; and (7) phenotypic changes characteristic of senescent cells
9546379In contrast, inhibition of RB binding to E2F or ectopic expression of E2F-1 in plaque VSMCs induced massive apoptosis, which required suppression of p53 to rescue cells
8816912Western blot analysis showed that among the E2F-associated proteins, the expression of E2F-1, cyclin A, and cyclin B but not p107 was cell cycle- and senescence-dependent
8853900We show that forced expression of a number of cell cycle-regulatory genes, including erbB-2, v-ras, v-myc, B-myb, ld-1, and E2F-1, alone or in combinations, cannot induce terminally differentiated skeletal muscle cells (myotubes) to synthesize DNA
8934878These included c-fos, c-jun, Id-1, Id-2, E2F-1, and cdc2
7616677Senescent cells showed the strong transcriptional repressions of early serum responsive genes (c-fos, c-jun, c-myc), late responsive genes of transcription factor E2F1 and cyclin E
7542356Selective repression of growth-regulating cdk2, cyclin E and E2F1 genes in human cell senescence
7542356Transcription factor E2F1 was also completely repressed at the mRNA and protein levels in senescent TIG-1 cells
7542356Therefore, the present results have indicated the selective repressions of cdk2, cyclin E and E2F1 in senescent cells
8206919In presenescent cells, E2F-1 mRNA was cell-cycle regulated, appearing a few hours before S phase
8206919The results suggest that senescent cells may fail to express late G1 genes due to repression of E2F-1, leading to a deficiency of E2F activity
8206919Furthermore, although E2F-1 stimulates DNA synthesis in some cells, other cells, including normal human fibroblasts, require additional factors
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