HCSGD entry for LCA5
1. General information
| Official gene symbol | LCA5 |
|---|---|
| Entrez ID | 167691 |
| Gene full name | Leber congenital amaurosis 5 |
| Other gene symbols | C6orf152 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005815 | Microtubule organizing center | IEA | cellular_component |
| GO:0005929 | Cilium | IDA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0032403 | Protein complex binding | IDA | molecular_function |
| GO:0042073 | Intraciliary transport | IEA | biological_process |
| GO:0045494 | Photoreceptor cell maintenance | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9257277573 | 0.0244185023 | 0.9999902473 | 0.3005449275 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4447420622 |
| GSE13712_SHEAR | Up | 0.1217516978 |
| GSE13712_STATIC | Down | -0.0889802376 |
| GSE19018 | Up | 0.4228573679 |
| GSE19899_A1 | Down | -0.1365583805 |
| GSE19899_A2 | Down | -1.3657990242 |
| PubMed_21979375_A1 | Down | -0.3585412620 |
| PubMed_21979375_A2 | Down | -0.0566686563 |
| GSE35957 | Down | -0.2187948846 |
| GSE36640 | Down | -0.0542665745 |
| GSE54402 | Down | -0.7330144258 |
| GSE9593 | Down | -0.0183526593 |
| GSE43922 | Down | -0.2928169108 |
| GSE24585 | Up | 0.3381934253 |
| GSE37065 | Down | -0.0422576292 |
| GSE28863_A1 | Up | 0.1080008297 |
| GSE28863_A2 | Down | -0.0802302477 |
| GSE28863_A3 | Down | -0.1248041248 |
| GSE28863_A4 | Down | -0.3463246183 |
| GSE48662 | Down | -0.5306704534 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019013 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019478 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-132-3p | MIMAT0000426 | MIRT021827 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-122-5p | MIMAT0000421 | MIRT023341 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT025623 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
