HCSGD entry for USP54
1. General information
| Official gene symbol | USP54 |
|---|---|
| Entrez ID | 159195 |
| Gene full name | ubiquitin specific peptidase 54 |
| Other gene symbols | C10orf29 bA137L10.3 bA137L10.4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004221 | Ubiquitin thiolesterase activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0006511 | Ubiquitin-dependent protein catabolic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1259870256 | 0.8653451047 | 0.7236177099 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0527226130 |
| GSE13712_SHEAR | Up | 0.8006346239 |
| GSE13712_STATIC | Up | 0.0436344026 |
| GSE19018 | Up | 0.0284308376 |
| GSE19899_A1 | Down | -0.0192819336 |
| GSE19899_A2 | Up | 0.3273244400 |
| PubMed_21979375_A1 | Up | 1.3364852516 |
| PubMed_21979375_A2 | Up | 0.5721231886 |
| GSE35957 | Down | -0.3325165988 |
| GSE36640 | Down | -0.3540345250 |
| GSE54402 | Up | 0.0381469241 |
| GSE9593 | Up | 0.2899517653 |
| GSE43922 | Up | 0.1159506749 |
| GSE24585 | Down | -0.0122332212 |
| GSE37065 | Up | 0.1961842424 |
| GSE28863_A1 | Down | -0.0163713818 |
| GSE28863_A2 | Up | 0.0025306818 |
| GSE28863_A3 | Down | -0.3223533231 |
| GSE28863_A4 | Up | 0.0356081886 |
| GSE48662 | Up | 0.0118868790 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024483 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026658 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-1303 | MIMAT0005891 | MIRT035898 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052169 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
