HCSGD entry for VPS13B
1. General information
| Official gene symbol | VPS13B |
|---|---|
| Entrez ID | 157680 |
| Gene full name | vacuolar protein sorting 13 homolog B (yeast) |
| Other gene symbols | CHS1 COH1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0015031 | Protein transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1482389461 | 0.4831615478 | 0.7711061858 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0150278202 |
| GSE13712_SHEAR | Down | -0.0393606707 |
| GSE13712_STATIC | Up | 0.0943321060 |
| GSE19018 | Up | 0.1493116797 |
| GSE19899_A1 | Down | -0.0782301800 |
| GSE19899_A2 | Down | -0.5577881788 |
| PubMed_21979375_A1 | Down | -0.3264656747 |
| PubMed_21979375_A2 | Up | 0.1196537172 |
| GSE35957 | Up | 0.4992442422 |
| GSE36640 | Up | 0.4525482476 |
| GSE54402 | Down | -0.3198008292 |
| GSE9593 | Up | 0.2784782859 |
| GSE43922 | Down | -0.3065364244 |
| GSE24585 | Up | 0.2920095662 |
| GSE37065 | Up | 0.0675967923 |
| GSE28863_A1 | Up | 0.8647339234 |
| GSE28863_A2 | Up | 0.8122979675 |
| GSE28863_A3 | Down | -0.3724440027 |
| GSE28863_A4 | Down | -0.3485085612 |
| GSE48662 | Up | 0.2025906329 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018276 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-30e-5p | MIMAT0000692 | MIRT044160 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045176 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
