HCSGD entry for PHF13
1. General information
| Official gene symbol | PHF13 |
|---|---|
| Entrez ID | 148479 |
| Gene full name | PHD finger protein 13 |
| Other gene symbols | PHF5 SPOC1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000278 | Mitotic cell cycle | IMP | biological_process |
| GO:0003682 | Chromatin binding | IDA | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | IEA | cellular_component |
| GO:0007059 | Chromosome segregation | IMP | biological_process |
| GO:0007076 | Mitotic chromosome condensation | IMP | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0035064 | Methylated histone residue binding | NAS | molecular_function |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6393643707 | 0.1386993883 | 0.9999902473 | 0.7172311591 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3458704621 |
| GSE13712_SHEAR | Down | -0.3882026259 |
| GSE13712_STATIC | Down | -0.5312545026 |
| GSE19018 | Down | -0.1866046664 |
| GSE19899_A1 | Down | -0.4372907911 |
| GSE19899_A2 | Down | -0.8171496112 |
| PubMed_21979375_A1 | Up | 0.5237993201 |
| PubMed_21979375_A2 | Up | 0.0906823447 |
| GSE35957 | Down | -0.5760659477 |
| GSE36640 | Down | -0.3122222830 |
| GSE54402 | Up | 0.2300025538 |
| GSE9593 | Up | 0.0395089131 |
| GSE43922 | Up | 0.0451316775 |
| GSE24585 | Up | 0.0003337934 |
| GSE37065 | Down | -0.1570592096 |
| GSE28863_A1 | Up | 0.4007943676 |
| GSE28863_A2 | Up | 0.4961425904 |
| GSE28863_A3 | Up | 0.0932724383 |
| GSE28863_A4 | Down | -0.2027943817 |
| GSE48662 | Down | -0.0070881033 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30b-5p | MIMAT0000420 | MIRT023425 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049465 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
