HCSGD entry for CSTF1
1. General information
| Official gene symbol | CSTF1 |
|---|---|
| Entrez ID | 1477 |
| Gene full name | cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa |
| Other gene symbols | CstF-50 CstFp50 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | TAS | biological_process |
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | TAS | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006369 | Termination of RNA polymerase II transcription | TAS | biological_process |
| GO:0006378 | MRNA polyadenylation | TAS | biological_process |
| GO:0006379 | MRNA cleavage | TAS | biological_process |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0031124 | MRNA 3'-end processing | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9224747540 | 0.0741734850 | 0.9999902473 | 0.5137038917 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2637879644 |
| GSE13712_SHEAR | Up | 0.1663382233 |
| GSE13712_STATIC | Up | 0.2817808846 |
| GSE19018 | Down | -0.2993862242 |
| GSE19899_A1 | Down | -0.1651140269 |
| GSE19899_A2 | Down | -0.0723290313 |
| PubMed_21979375_A1 | Down | -0.2870315554 |
| PubMed_21979375_A2 | Down | -0.4012414588 |
| GSE35957 | Up | 0.0116928117 |
| GSE36640 | Down | -0.5431914535 |
| GSE54402 | Down | -0.0093743632 |
| GSE9593 | Down | -0.3727251772 |
| GSE43922 | Down | -0.0219354059 |
| GSE24585 | Down | -0.0336562079 |
| GSE37065 | Down | -0.0701713583 |
| GSE28863_A1 | Up | 0.2319440108 |
| GSE28863_A2 | Up | 0.0694970490 |
| GSE28863_A3 | Down | -0.6987431447 |
| GSE28863_A4 | Up | 0.1137371806 |
| GSE48662 | Down | -0.0514943897 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016180 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
