HCSGD entry for RDH12
1. General information
| Official gene symbol | RDH12 |
|---|---|
| Entrez ID | 145226 |
| Gene full name | retinol dehydrogenase 12 (all-trans/9-cis/11-cis) |
| Other gene symbols | LCA13 LCA3 RP53 SDR7C2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001523 | Retinoid metabolic process | TAS | biological_process |
| GO:0004745 | Retinol dehydrogenase activity | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0007601 | Visual perception | TAS | biological_process |
| GO:0007603 | Phototransduction, visible light | TAS | biological_process |
| GO:0042572 | Retinol metabolic process | IDA | biological_process |
| GO:0045494 | Photoreceptor cell maintenance | TAS | biological_process |
| GO:0060342 | Photoreceptor inner segment membrane | TAS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8630376391 | 0.6787484442 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0903027046 |
| GSE13712_SHEAR | Up | 0.0142382729 |
| GSE13712_STATIC | Up | 0.1339080685 |
| GSE19018 | Up | 0.0264321431 |
| GSE19899_A1 | Down | -0.0028254275 |
| GSE19899_A2 | Up | 0.0156981909 |
| PubMed_21979375_A1 | Up | 0.0143593465 |
| PubMed_21979375_A2 | Down | -0.0171431816 |
| GSE35957 | Down | -0.1230725655 |
| GSE36640 | Down | -0.1013728226 |
| GSE54402 | Down | -0.1749249172 |
| GSE9593 | Up | 0.1417159993 |
| GSE43922 | Up | 0.0213535785 |
| GSE24585 | Down | -0.1330121689 |
| GSE37065 | Down | -0.0092458951 |
| GSE28863_A1 | Down | -0.1298565596 |
| GSE28863_A2 | Down | -0.0483613465 |
| GSE28863_A3 | Up | 0.0449724238 |
| GSE28863_A4 | Up | 0.1204658530 |
| GSE48662 | Up | 0.0438016616 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Name | Drug | Accession number |
|---|---|---|
| Vitamin A | DB00162 | NUTR00007 | APRD00486 |
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
