HCSGD entry for COL26A1
1. General information
| Official gene symbol | COL26A1 |
|---|---|
| Entrez ID | 136227 |
| Gene full name | collagen, type XXVI, alpha 1 |
| Other gene symbols | EMI6 EMID2 EMU2 SH2B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005578 | Proteinaceous extracellular matrix | IEA | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0010811 | Positive regulation of cell-substrate adhesion | IEA | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6721135025 | 0.8542205007 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0596042109 |
| GSE13712_SHEAR | Down | -0.1329494272 |
| GSE13712_STATIC | Down | -0.1573831120 |
| GSE19018 | Up | 0.1980374292 |
| GSE19899_A1 | Down | -0.0968620632 |
| GSE19899_A2 | Up | 0.1133685776 |
| PubMed_21979375_A1 | Up | 0.0264266760 |
| PubMed_21979375_A2 | Up | 0.0836445602 |
| GSE35957 | Up | 0.0654356902 |
| GSE36640 | Up | 0.0561327446 |
| GSE54402 | Down | -0.0237766293 |
| GSE9593 | Down | -0.0383919977 |
| GSE43922 | Up | 0.0511648773 |
| GSE24585 | Up | 0.0232331533 |
| GSE37065 | Down | -0.0100153962 |
| GSE28863_A1 | Down | -0.0417450475 |
| GSE28863_A2 | Up | 0.2519266044 |
| GSE28863_A3 | Up | 0.2846393865 |
| GSE28863_A4 | Up | 0.0267558476 |
| GSE48662 | Up | 0.0520626791 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
