HCSGD entry for LSM11

1. General information

Official gene symbolLSM11
Entrez ID134353
Gene full nameLSM11, U7 small nuclear RNA associated
Other gene symbols
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000084Mitotic S phaseIMPbiological_process
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0005683U7 snRNPIDA ISScellular_component
GO:0006366Transcription from RNA polymerase II promoterTASbiological_process
GO:0006369Termination of RNA polymerase II transcriptionTASbiological_process
GO:0006398Histone mRNA 3'-end processingISSbiological_process
GO:0008334Histone mRNA metabolic processTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0031124MRNA 3'-end processingTASbiological_process
GO:0071204Histone pre-mRNA 3'end processing complexISScellular_component
GO:0071209U7 snRNA bindingIDAmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.96084855060.03983754800.99999024730.3762565841

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.4250249923
GSE13712_SHEARDown-0.3578233410
GSE13712_STATICDown-0.0141422272
GSE19018Down-0.0427888454
GSE19899_A1Up0.0600222553
GSE19899_A2Down-0.4459829078
PubMed_21979375_A1Up0.4486288426
PubMed_21979375_A2Up0.1156602560
GSE35957Down-0.1156127151
GSE36640Down-0.7539058027
GSE54402Down-0.1487174578
GSE9593Up0.2022685658
GSE43922Up0.0389943773
GSE24585Down-0.2903261834
GSE37065Down-0.3422653097
GSE28863_A1Down-0.4375667439
GSE28863_A2Down-0.0001000605
GSE28863_A3Down-0.2538237221
GSE28863_A4Down-0.4251864688
GSE48662Up0.1744431096

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-195-5pMIMAT0000461MIRT044861CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.