HCSGD entry for GNPDA2
1. General information
| Official gene symbol | GNPDA2 |
|---|---|
| Entrez ID | 132789 |
| Gene full name | glucosamine-6-phosphate deaminase 2 |
| Other gene symbols | GNP2 SB52 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004342 | Glucosamine-6-phosphate deaminase activity | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | IEA | biological_process |
| GO:0006044 | N-acetylglucosamine metabolic process | IEA | biological_process |
| GO:0016787 | Hydrolase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3321067133 | 0.1359513468 | 0.9999902473 | 0.7111238871 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3917588929 |
| GSE13712_SHEAR | Up | 0.4159407172 |
| GSE13712_STATIC | Up | 0.2413205447 |
| GSE19018 | Down | -0.3780266546 |
| GSE19899_A1 | Down | -0.1252031866 |
| GSE19899_A2 | Down | -1.1428082351 |
| PubMed_21979375_A1 | Up | 0.7553355056 |
| PubMed_21979375_A2 | Down | -1.1533073524 |
| GSE35957 | Up | 0.3321564808 |
| GSE36640 | Up | 0.2866915339 |
| GSE54402 | Down | -0.3256625905 |
| GSE9593 | Up | 0.6039927231 |
| GSE43922 | Down | -0.1546767758 |
| GSE24585 | Up | 0.0154440741 |
| GSE37065 | Up | 0.2059916853 |
| GSE28863_A1 | Down | -0.0486178272 |
| GSE28863_A2 | Up | 0.0037948507 |
| GSE28863_A3 | Down | -0.3905615541 |
| GSE28863_A4 | Down | -0.2379788837 |
| GSE48662 | Down | -0.1819979945 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT002816 | Microarray | Functional MTI (Weak) | 15685193 |
| hsa-miR-1 | MIMAT0000416 | MIRT002816 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-106b-5p | MIMAT0000680 | MIRT020422 | Microarray | Functional MTI (Weak) | 17242205 |
| hsa-miR-122-5p | MIMAT0000421 | MIRT023359 | Microarray | Functional MTI (Weak) | 17612493 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
