HCSGD entry for LIN54
1. General information
| Official gene symbol | LIN54 |
|---|---|
| Entrez ID | 132660 |
| Gene full name | lin-54 homolog (C. elegans) |
| Other gene symbols | CXCDC1 JC8.6 MIP120 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000278 | Mitotic cell cycle | TAS | biological_process |
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9485094639 | 0.0283352418 | 0.9999902473 | 0.3205001287 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1417818159 |
| GSE13712_SHEAR | Up | 0.1409651997 |
| GSE13712_STATIC | Down | -0.1597569460 |
| GSE19018 | Up | 0.1765204508 |
| GSE19899_A1 | Down | -0.0377276852 |
| GSE19899_A2 | Down | -1.0219534011 |
| PubMed_21979375_A1 | Down | -0.5180508252 |
| PubMed_21979375_A2 | Down | -0.8534698811 |
| GSE35957 | Down | -0.1974305065 |
| GSE36640 | Down | -0.4827602123 |
| GSE54402 | Up | 0.0978209254 |
| GSE9593 | Down | -0.0045636098 |
| GSE43922 | Down | -0.3350064830 |
| GSE24585 | Up | 0.3546602766 |
| GSE37065 | Up | 0.2005912962 |
| GSE28863_A1 | Down | -0.1906607782 |
| GSE28863_A2 | Down | -0.4812519690 |
| GSE28863_A3 | Down | -0.5486946057 |
| GSE28863_A4 | Down | -0.1138746515 |
| GSE48662 | Down | -0.1472711333 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-32-5p | MIMAT0000090 | MIRT028262 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
