HCSGD entry for COL19A1

1. General information

Official gene symbolCOL19A1
Entrez ID1310
Gene full namecollagen, type XIX, alpha 1
Other gene symbolsCOL9A1L D6S228E
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001501Skeletal system developmentTASbiological_process
GO:0005201Extracellular matrix structural constituentNASmolecular_function
GO:0005576Extracellular regionTAScellular_component
GO:0005578Proteinaceous extracellular matrixNAScellular_component
GO:0005581CollagenNAScellular_component
GO:0005788Endoplasmic reticulum lumenTAScellular_component
GO:0007155Cell adhesionNASbiological_process
GO:0007519Skeletal muscle tissue developmentIEAbiological_process
GO:0016337Cell-cell adhesionNASbiological_process
GO:0022617Extracellular matrix disassemblyTASbiological_process
GO:0030154Cell differentiationIEAbiological_process
GO:0030198Extracellular matrix organizationNAS TASbiological_process
GO:0030574Collagen catabolic processTASbiological_process
GO:0030674Protein binding, bridgingNASmolecular_function
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.85039363630.72365218650.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0571953547
GSE13712_SHEARDown-0.1454642199
GSE13712_STATICUp0.0258945197
GSE19018Down-0.1544082419
GSE19899_A1Up0.0163090017
GSE19899_A2Down-0.0073903806
PubMed_21979375_A1Up0.3661059295
PubMed_21979375_A2Down-0.0814694226
GSE35957Up0.0382440487
GSE36640Up0.0537091604
GSE54402Up0.2371483584
GSE9593Up0.0183973256
GSE43922Up0.1099921077
GSE24585Down-0.1989983008
GSE37065Down-0.0431336731
GSE28863_A1Down-0.1239414130
GSE28863_A2Down-0.0692371776
GSE28863_A3Up0.1644632036
GSE28863_A4Up0.0609138395
GSE48662Down-0.0407692054

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.