HCSGD entry for COL17A1

1. General information

Official gene symbolCOL17A1
Entrez ID1308
Gene full namecollagen, type XVII, alpha 1
Other gene symbolsBA16H23.2 BP180 BPA-2 BPAG2 LAD-1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005515Protein bindingIPImolecular_function
GO:0005576Extracellular regionTAScellular_component
GO:0005581CollagenIEAcellular_component
GO:0005604Basement membraneIEAcellular_component
GO:0005788Endoplasmic reticulum lumenTAScellular_component
GO:0005886Plasma membraneTAScellular_component
GO:0005887Integral component of plasma membraneTAScellular_component
GO:0005911Cell-cell junctionTAScellular_component
GO:0007160Cell-matrix adhesionTASbiological_process
GO:0008544Epidermis developmentTASbiological_process
GO:0022617Extracellular matrix disassemblyTASbiological_process
GO:0030056HemidesmosomeIDAcellular_component
GO:0030198Extracellular matrix organizationTASbiological_process
GO:0030574Collagen catabolic processTASbiological_process
GO:0031581Hemidesmosome assemblyIDA TASbiological_process
GO:0034329Cell junction assemblyTASbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.67655391890.55211899620.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0185497229
GSE13712_SHEARDown-0.7228960145
GSE13712_STATICUp0.3146765315
GSE19018Up0.0163564105
GSE19899_A1Up0.1091374466
GSE19899_A2Up0.1079625129
PubMed_21979375_A1Up0.0137211027
PubMed_21979375_A2Down-0.1748769332
GSE35957Up0.0200124528
GSE36640Down-0.0629407348
GSE54402Up0.1016488379
GSE9593Down-0.0168773026
GSE43922Up0.0138816941
GSE24585Up0.1142930061
GSE37065Down-0.0779639144
GSE28863_A1Down-0.0500678137
GSE28863_A2Up0.0280939432
GSE28863_A3Up0.1911637753
GSE28863_A4Up0.1040064569
GSE48662Down-0.1986635509

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-124-3pMIMAT0000422MIRT022276MicroarrayFunctional MTI (Weak)18668037
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.