HCSGD entry for COL13A1
1. General information
| Official gene symbol | COL13A1 |
|---|---|
| Entrez ID | 1305 |
| Gene full name | collagen, type XIII, alpha 1 |
| Other gene symbols | COLXIIIA1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001763 | Morphogenesis of a branching structure | ISS | biological_process |
| GO:0001958 | Endochondral ossification | ISS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005600 | Collagen type XIII | TAS | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005911 | Cell-cell junction | IEA | cellular_component |
| GO:0007160 | Cell-matrix adhesion | IPI | biological_process |
| GO:0008201 | Heparin binding | IDA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016337 | Cell-cell adhesion | IEP | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1862927358 | 0.0966337943 | 0.8419318510 | 0.5924627853 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0233349737 |
| GSE13712_SHEAR | Down | -0.0341468018 |
| GSE13712_STATIC | Up | 0.2804484612 |
| GSE19018 | Up | 0.5830140357 |
| GSE19899_A1 | Down | -0.7274766424 |
| GSE19899_A2 | Down | -1.0200499706 |
| PubMed_21979375_A1 | Down | -1.5348123458 |
| PubMed_21979375_A2 | Down | -1.2021498817 |
| GSE35957 | Up | 1.0352823728 |
| GSE36640 | Up | 0.5510486533 |
| GSE54402 | Down | -0.1651415057 |
| GSE9593 | Up | 0.0025219321 |
| GSE43922 | Up | 0.0475278278 |
| GSE24585 | Down | -0.1338873574 |
| GSE37065 | Down | -0.0218168283 |
| GSE28863_A1 | Down | -0.1566807863 |
| GSE28863_A2 | Up | 0.1708906774 |
| GSE28863_A3 | Up | 0.2558481976 |
| GSE28863_A4 | Up | 0.1816005968 |
| GSE48662 | Down | -0.1057738092 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-146a-5p | MIMAT0000449 | NA | hsa-miR-146a | 19944095 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
