HCSGD entry for COL10A1
1. General information
| Official gene symbol | COL10A1 |
|---|---|
| Entrez ID | 1300 |
| Gene full name | collagen, type X, alpha 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | TAS | biological_process |
| GO:0001958 | Endochondral ossification | IEA | biological_process |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005581 | Collagen | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0005938 | Cell cortex | IEA | cellular_component |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0051216 | Cartilage development | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0003238479 | 0.7871703317 | 0.0480960674 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3991506318 |
| GSE13712_SHEAR | Down | -0.0811442300 |
| GSE13712_STATIC | Down | -0.2598462204 |
| GSE19018 | Up | 0.0449286462 |
| GSE19899_A1 | Up | 2.4240833792 |
| GSE19899_A2 | Up | 5.3735964669 |
| PubMed_21979375_A1 | Up | 3.6261620632 |
| PubMed_21979375_A2 | Up | 4.7964247715 |
| GSE35957 | Down | -1.0491315435 |
| GSE36640 | Up | 0.7300784949 |
| GSE54402 | Up | 4.7351511018 |
| GSE9593 | Up | 0.0499030364 |
| GSE43922 | Up | 0.8041810517 |
| GSE24585 | Up | 0.1287008798 |
| GSE37065 | Down | -0.1159325237 |
| GSE28863_A1 | Down | -0.0988523471 |
| GSE28863_A2 | Down | -0.0676061147 |
| GSE28863_A3 | Up | 0.3769473867 |
| GSE28863_A4 | Down | -0.0105322363 |
| GSE48662 | Down | -0.5142381620 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017342 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
