HCSGD entry for COL9A2
1. General information
| Official gene symbol | COL9A2 |
|---|---|
| Entrez ID | 1298 |
| Gene full name | collagen, type IX, alpha 2 |
| Other gene symbols | DJ39G22.4 EDM2 MED STL5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001501 | Skeletal system development | TAS | biological_process |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005594 | Collagen type IX | IDA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030020 | Extracellular matrix structural constituent conferring tensile strength | IC | molecular_function |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8763598609 | 0.5159449907 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1334937790 |
| GSE13712_SHEAR | Down | -0.2183548474 |
| GSE13712_STATIC | Down | -0.0590613575 |
| GSE19018 | Down | -0.1873433210 |
| GSE19899_A1 | Up | 0.0509417368 |
| GSE19899_A2 | Up | 0.1486993999 |
| PubMed_21979375_A1 | Up | 0.0546175079 |
| PubMed_21979375_A2 | Down | -0.0623121711 |
| GSE35957 | Up | 0.1001465373 |
| GSE36640 | Down | -0.0247868861 |
| GSE54402 | Down | -0.1350946287 |
| GSE9593 | Up | 0.0471653750 |
| GSE43922 | Down | -0.0055713794 |
| GSE24585 | Down | -0.0490331828 |
| GSE37065 | Down | -0.1121736356 |
| GSE28863_A1 | Down | -0.2050091641 |
| GSE28863_A2 | Down | -0.0153771282 |
| GSE28863_A3 | Up | 0.3356089102 |
| GSE28863_A4 | Up | 0.1682016023 |
| GSE48662 | Up | 0.0984137452 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019087 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
