HCSGD entry for NIPA1
1. General information
| Official gene symbol | NIPA1 |
|---|---|
| Entrez ID | 123606 |
| Gene full name | non imprinted in Prader-Willi/Angelman syndrome 1 |
| Other gene symbols | FSP3 SPG6 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005769 | Early endosome | IEA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0008219 | Cell death | IEA | biological_process |
| GO:0015095 | Magnesium ion transmembrane transporter activity | IEA | molecular_function |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0008951560 | 0.9987657916 | 0.0823111498 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0476206210 |
| GSE13712_SHEAR | Up | 1.0018305339 |
| GSE13712_STATIC | Up | 1.0287081713 |
| GSE19018 | Up | 0.6123168619 |
| GSE19899_A1 | Up | 0.4368349719 |
| GSE19899_A2 | Up | 1.2185047050 |
| PubMed_21979375_A1 | Up | 1.8595691643 |
| PubMed_21979375_A2 | Up | 0.7805809220 |
| GSE35957 | Up | 0.3146437697 |
| GSE36640 | Up | 0.9481463962 |
| GSE54402 | Up | 0.2420050296 |
| GSE9593 | Up | 0.3567231676 |
| GSE43922 | Up | 0.8556000787 |
| GSE24585 | Up | 0.4534704882 |
| GSE37065 | Up | 0.2947630824 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.2267854213 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-9-5p | MIMAT0000441 | MIRT021392 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024858 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026118 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-96-5p | MIMAT0000095 | MIRT027921 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
