HCSGD entry for PDZD8
1. General information
| Official gene symbol | PDZD8 |
|---|---|
| Entrez ID | 118987 |
| Gene full name | PDZ domain containing 8 |
| Other gene symbols | PDZK8 bA129M16.2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0007010 | Cytoskeleton organization | IMP | biological_process |
| GO:0016032 | Viral process | IEA | biological_process |
| GO:0022604 | Regulation of cell morphogenesis | IMP | biological_process |
| GO:0035556 | Intracellular signal transduction | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0097757874 | 0.9064234794 | 0.2522632353 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1186183630 |
| GSE13712_SHEAR | Down | -0.1124025084 |
| GSE13712_STATIC | Up | 0.0370379935 |
| GSE19018 | Down | -0.2999919602 |
| GSE19899_A1 | Up | 0.5604488068 |
| GSE19899_A2 | Up | 0.5919953343 |
| PubMed_21979375_A1 | Up | 1.2596787830 |
| PubMed_21979375_A2 | Up | 0.9536046794 |
| GSE35957 | Up | 0.0478746237 |
| GSE36640 | Up | 0.5632545210 |
| GSE54402 | Up | 0.6256209311 |
| GSE9593 | Down | -0.0502653027 |
| GSE43922 | Up | 0.5347834583 |
| GSE24585 | Down | -0.5099456334 |
| GSE37065 | Down | -0.2310236158 |
| GSE28863_A1 | Up | 0.5285859444 |
| GSE28863_A2 | Up | 0.5897008153 |
| GSE28863_A3 | Down | -0.5708000207 |
| GSE28863_A4 | Up | 0.2732565454 |
| GSE48662 | Up | 0.4150289580 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017055 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-151a-5p | MIMAT0004697 | MIRT019518 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020107 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-425-5p | MIMAT0003393 | MIRT039302 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
