HCSGD entry for RAB39B
1. General information
| Official gene symbol | RAB39B |
|---|---|
| Entrez ID | 116442 |
| Gene full name | RAB39B, member RAS oncogene family |
| Other gene symbols | MRX72 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016192 | Vesicle-mediated transport | ISS | biological_process |
| GO:0050808 | Synapse organization | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2311351164 | 0.8014099426 | 0.9146752556 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1451819297 |
| GSE13712_SHEAR | Down | -0.0353693801 |
| GSE13712_STATIC | Down | -0.0775450351 |
| GSE19018 | Down | -0.0864611505 |
| GSE19899_A1 | Up | 0.1040922488 |
| GSE19899_A2 | Down | -0.5226982627 |
| PubMed_21979375_A1 | Up | 0.1978455881 |
| PubMed_21979375_A2 | Up | 0.0596726002 |
| GSE35957 | Up | 0.0936311950 |
| GSE36640 | Down | -0.0025653477 |
| GSE54402 | Up | 0.4780039132 |
| GSE9593 | Up | 0.1305409390 |
| GSE43922 | Up | 0.0903832897 |
| GSE24585 | Down | -0.0379141446 |
| GSE37065 | Down | -0.0031252685 |
| GSE28863_A1 | Up | 0.0831917181 |
| GSE28863_A2 | Down | -0.5495820213 |
| GSE28863_A3 | Up | 0.3177628947 |
| GSE28863_A4 | Up | 0.1042745724 |
| GSE48662 | Up | 0.4412830372 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT024007 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
