HCSGD entry for LYSMD3
1. General information
| Official gene symbol | LYSMD3 |
|---|---|
| Entrez ID | 116068 |
| Gene full name | LysM, putative peptidoglycan-binding, domain containing 3 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016998 | Cell wall macromolecule catabolic process | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4796071692 | 0.0939242088 | 0.9999902473 | 0.5840253012 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.6331947944 |
| GSE13712_SHEAR | Up | 0.6051503816 |
| GSE13712_STATIC | Up | 0.6432801975 |
| GSE19018 | Up | 0.2611025776 |
| GSE19899_A1 | Down | -0.0544286489 |
| GSE19899_A2 | Down | -0.3016275559 |
| PubMed_21979375_A1 | Up | 0.2918000740 |
| PubMed_21979375_A2 | Up | 0.1103751611 |
| GSE35957 | Down | -0.4301232054 |
| GSE36640 | Up | 0.2354305944 |
| GSE54402 | Down | -0.1236979625 |
| GSE9593 | Down | -0.4917353968 |
| GSE43922 | Down | -0.0311824395 |
| GSE24585 | Up | 0.3087843466 |
| GSE37065 | Up | 0.0047939841 |
| GSE28863_A1 | Down | -0.2302383525 |
| GSE28863_A2 | Up | 0.1421516640 |
| GSE28863_A3 | Down | -0.8414574643 |
| GSE28863_A4 | Down | -0.1960516910 |
| GSE48662 | Down | -0.1342334303 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-340-5p | MIMAT0004692 | MIRT019546 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT021921 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT021921 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022227 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025090 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026182 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027256 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-27a-3p | MIMAT0000084 | MIRT028702 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
