HCSGD entry for SYNPO
1. General information
| Official gene symbol | SYNPO |
|---|---|
| Entrez ID | 11346 |
| Gene full name | synaptopodin |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001725 | Stress fiber | IEA | cellular_component |
| GO:0003779 | Actin binding | ISS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005923 | Tight junction | IEA | cellular_component |
| GO:0014069 | Postsynaptic density | IEA | cellular_component |
| GO:0015629 | Actin cytoskeleton | IDA ISS | cellular_component |
| GO:0032233 | Positive regulation of actin filament bundle assembly | IEA ISS | biological_process |
| GO:0043197 | Dendritic spine | TAS | cellular_component |
| GO:0043204 | Perikaryon | IEA | cellular_component |
| GO:0045211 | Postsynaptic membrane | IEA | cellular_component |
| GO:0051492 | Regulation of stress fiber assembly | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6509409597 | 0.0955317769 | 0.9999902473 | 0.5891499297 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3422505661 |
| GSE13712_SHEAR | Up | 0.2700468816 |
| GSE13712_STATIC | Up | 0.4311308729 |
| GSE19018 | Up | 0.0969179485 |
| GSE19899_A1 | Down | -0.2864680017 |
| GSE19899_A2 | Down | -0.3162756317 |
| PubMed_21979375_A1 | Down | -0.4376403299 |
| PubMed_21979375_A2 | Up | 0.0566664381 |
| GSE35957 | Down | -1.1083799805 |
| GSE36640 | Down | -0.1781381018 |
| GSE54402 | Down | -0.5811961799 |
| GSE9593 | Down | -0.1333782589 |
| GSE43922 | Up | 0.0528286835 |
| GSE24585 | Up | 0.2118116158 |
| GSE37065 | Down | -0.3788503573 |
| GSE28863_A1 | Down | -0.0804627909 |
| GSE28863_A2 | Up | 0.4471473137 |
| GSE28863_A3 | Down | -0.3260420089 |
| GSE28863_A4 | Down | -0.0276025233 |
| GSE48662 | Up | 0.5889249619 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
