HCSGD entry for RNF13
1. General information
| Official gene symbol | RNF13 |
|---|---|
| Entrez ID | 11342 |
| Gene full name | ring finger protein 13 |
| Other gene symbols | RZF |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0004842 | Ubiquitin-protein ligase activity | IEA ISS | molecular_function |
| GO:0005637 | Nuclear inner membrane | IEA | cellular_component |
| GO:0005765 | Lysosomal membrane | IDA IEA ISS | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA ISS | cellular_component |
| GO:0051865 | Protein autoubiquitination | IEA ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0207382280 | 0.9594782911 | 0.3465720000 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4878458941 |
| GSE13712_SHEAR | Down | -0.0068544848 |
| GSE13712_STATIC | Up | 0.1653690775 |
| GSE19018 | Up | 0.7848673084 |
| GSE19899_A1 | Down | -0.1805586237 |
| GSE19899_A2 | Down | -0.0344336403 |
| PubMed_21979375_A1 | Up | 0.4510016059 |
| PubMed_21979375_A2 | Up | 0.6874287719 |
| GSE35957 | Up | 0.2824435695 |
| GSE36640 | Up | 0.6569221228 |
| GSE54402 | Down | -0.3479991542 |
| GSE9593 | Up | 0.5330741674 |
| GSE43922 | Up | 0.1169608562 |
| GSE24585 | Up | 0.0464844899 |
| GSE37065 | Up | 0.8618579624 |
| GSE28863_A1 | Down | -0.0133376415 |
| GSE28863_A2 | Up | 0.3041546819 |
| GSE28863_A3 | Down | -0.1099527416 |
| GSE28863_A4 | Down | -0.0449166729 |
| GSE48662 | Up | 0.2351792546 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027479 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
