HCSGD entry for SNF8
1. General information
| Official gene symbol | SNF8 |
|---|---|
| Entrez ID | 11267 |
| Gene full name | SNF8, ESCRT-II complex subunit |
| Other gene symbols | Dot3 EAP30 VPS22 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005667 | Transcription factor complex | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | IDA | biological_process |
| GO:0008134 | Transcription factor binding | IDA | molecular_function |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016197 | Endosomal transport | TAS | biological_process |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9812540709 | 0.0295857984 | 0.9999902473 | 0.3257851171 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2149010871 |
| GSE13712_SHEAR | Down | -0.1991406569 |
| GSE13712_STATIC | Down | -0.3609384772 |
| GSE19018 | Down | -0.2694111484 |
| GSE19899_A1 | Down | -0.5519118909 |
| GSE19899_A2 | Down | -0.1178543221 |
| PubMed_21979375_A1 | Down | -0.3497253550 |
| PubMed_21979375_A2 | Down | -0.6301159548 |
| GSE35957 | Down | -0.2833012571 |
| GSE36640 | Down | -0.5783342166 |
| GSE54402 | Up | 0.2459371875 |
| GSE9593 | Down | -0.1398400786 |
| GSE43922 | Down | -0.0259947089 |
| GSE24585 | Up | 0.2537138998 |
| GSE37065 | Down | -0.2658428973 |
| GSE28863_A1 | Down | -0.1951603955 |
| GSE28863_A2 | Down | -0.3150065892 |
| GSE28863_A3 | Down | -0.4480777940 |
| GSE28863_A4 | Down | -0.0205821853 |
| GSE48662 | Down | -0.2864733608 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049084 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-1260b | MIMAT0015041 | MIRT052759 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
