HCSGD entry for PRAF2
1. General information
| Official gene symbol | PRAF2 |
|---|---|
| Entrez ID | 11230 |
| Gene full name | PRA1 domain family, member 2 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0010008 | Endosome membrane | IEA | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0015813 | L-glutamate transport | ISS | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0502351924 | 0.3232316819 | 0.4905505193 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6921203627 |
| GSE13712_SHEAR | Down | -0.5991595383 |
| GSE13712_STATIC | Down | -0.5065961744 |
| GSE19018 | Down | -0.3006139580 |
| GSE19899_A1 | Down | -0.4669939933 |
| GSE19899_A2 | Up | 1.3132842827 |
| PubMed_21979375_A1 | Up | 1.4167644267 |
| PubMed_21979375_A2 | Up | 0.6774491787 |
| GSE35957 | Down | -0.4311958446 |
| GSE36640 | Up | 0.8644320603 |
| GSE54402 | Down | -0.0122451972 |
| GSE9593 | Up | 0.3086418923 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Down | -0.4063387690 |
| GSE28863_A2 | Down | -0.4413942299 |
| GSE28863_A3 | Up | 0.5168395713 |
| GSE28863_A4 | Up | 0.0441646688 |
| GSE48662 | Up | 0.2768451739 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT001516 | pSILAC | Functional MTI (Weak) | 18668040 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051851 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052307 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
