HCSGD entry for LDB3
1. General information
| Official gene symbol | LDB3 |
|---|---|
| Entrez ID | 11155 |
| Gene full name | LIM domain binding 3 |
| Other gene symbols | CMD1C CYPHER LDB3Z1 LDB3Z4 LVNC3 ORACLE PDLIM6 ZASP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005080 | Protein kinase C binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005856 | Cytoskeleton | IDA | cellular_component |
| GO:0008092 | Cytoskeletal protein binding | IPI | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0030018 | Z disc | IDA | cellular_component |
| GO:0031143 | Pseudopodium | IEA | cellular_component |
| GO:0045214 | Sarcomere organization | IEA | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IEA | cellular_component |
| GO:0051371 | Muscle alpha-actinin binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8313696136 | 0.6664867330 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0269290541 |
| GSE13712_SHEAR | Up | 0.0017540207 |
| GSE13712_STATIC | Down | -0.0112019356 |
| GSE19018 | Down | -0.1737723973 |
| GSE19899_A1 | Up | 0.0080582467 |
| GSE19899_A2 | Down | -0.2304826684 |
| PubMed_21979375_A1 | Down | -0.2365645592 |
| PubMed_21979375_A2 | Down | -0.1824958392 |
| GSE35957 | Down | -0.0526279130 |
| GSE36640 | Down | -0.0620049054 |
| GSE54402 | Down | -0.0826705982 |
| GSE9593 | Up | 0.0353158083 |
| GSE43922 | Up | 0.0494405296 |
| GSE24585 | Up | 0.0223003617 |
| GSE37065 | Up | 0.0694154756 |
| GSE28863_A1 | Down | -0.1092274290 |
| GSE28863_A2 | Down | -0.0875004362 |
| GSE28863_A3 | Up | 0.3234537564 |
| GSE28863_A4 | Up | 0.1298664426 |
| GSE48662 | Up | 0.1862109010 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
