HCSGD entry for RAB40B
1. General information
| Official gene symbol | RAB40B |
|---|---|
| Entrez ID | 10966 |
| Gene full name | RAB40B, member RAS oncogene family |
| Other gene symbols | RAR SEC4L |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
| GO:0035556 | Intracellular signal transduction | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3141098021 | 0.7207511569 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1323353373 |
| GSE13712_SHEAR | Down | -0.2007400843 |
| GSE13712_STATIC | Up | 0.2218124817 |
| GSE19018 | Up | 0.2608715227 |
| GSE19899_A1 | Up | 0.1107479551 |
| GSE19899_A2 | Up | 0.4179660518 |
| PubMed_21979375_A1 | Down | -0.6645045276 |
| PubMed_21979375_A2 | Up | 0.0114221166 |
| GSE35957 | Up | 0.3102046649 |
| GSE36640 | Up | 0.9265270204 |
| GSE54402 | Down | -0.1664425936 |
| GSE9593 | Up | 0.2044600317 |
| GSE43922 | Up | 0.0503956324 |
| GSE24585 | Down | -0.0417027163 |
| GSE37065 | Down | -0.0645556049 |
| GSE28863_A1 | Down | -0.0409935857 |
| GSE28863_A2 | Down | -0.1920153392 |
| GSE28863_A3 | Up | 0.1603035780 |
| GSE28863_A4 | Down | -0.0335292080 |
| GSE48662 | Up | 0.0213442335 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-204-5p | MIMAT0000265 | MIRT005841 | Luciferase reporter assay//Microarray//qRT-PCR | Functional MTI | 21282569 |
| hsa-miR-215-5p | MIMAT0000272 | MIRT024701 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026754 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030050 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
