HCSGD entry for SUB1
1. General information
| Official gene symbol | SUB1 |
|---|---|
| Entrez ID | 10923 |
| Gene full name | SUB1 homolog (S. cerevisiae) |
| Other gene symbols | P15 PC4 p14 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003697 | Single-stranded DNA binding | IDA | molecular_function |
| GO:0003713 | Transcription coactivator activity | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005667 | Transcription factor complex | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006357 | Regulation of transcription from RNA polymerase II promoter | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8526434634 | 0.4096520117 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1504102520 |
| GSE13712_SHEAR | Up | 0.0120201188 |
| GSE13712_STATIC | Down | -0.1148935697 |
| GSE19018 | Down | -0.4802545590 |
| GSE19899_A1 | Up | 0.0764582748 |
| GSE19899_A2 | Down | -0.0758285254 |
| PubMed_21979375_A1 | Up | 0.1518899264 |
| PubMed_21979375_A2 | Up | 0.0401375263 |
| GSE35957 | Down | -0.0391486971 |
| GSE36640 | Down | -0.2279274250 |
| GSE54402 | Up | 0.4024294107 |
| GSE9593 | Down | -0.1896527566 |
| GSE43922 | Down | -0.0424656918 |
| GSE24585 | Up | 0.1273291070 |
| GSE37065 | Down | -0.0519570486 |
| GSE28863_A1 | - | - |
| GSE28863_A2 | - | - |
| GSE28863_A3 | - | - |
| GSE28863_A4 | - | - |
| GSE48662 | Down | -0.3492551847 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019809 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-101-3p | MIMAT0000099 | MIRT027373 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051658 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
