HCSGD entry for TXNL4A
1. General information
| Official gene symbol | TXNL4A |
|---|---|
| Entrez ID | 10907 |
| Gene full name | thioredoxin-like 4A |
| Other gene symbols | DIB1 DIM1 HsT161 TXNL4 U5-15kD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | TAS | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | TAS | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | TAS | biological_process |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IEA TAS | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0007067 | Mitosis | IEA | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7292810266 | 0.2541437749 | 0.9999902473 | 0.9667572977 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1163419559 |
| GSE13712_SHEAR | Down | -0.0414397191 |
| GSE13712_STATIC | Down | -0.2473502441 |
| GSE19018 | Down | -0.0588440565 |
| GSE19899_A1 | Down | -0.2205213349 |
| GSE19899_A2 | Up | 0.4027995191 |
| PubMed_21979375_A1 | Down | -0.0167970119 |
| PubMed_21979375_A2 | Down | -0.0212916021 |
| GSE35957 | Up | 0.0034063445 |
| GSE36640 | Up | 0.0839238628 |
| GSE54402 | Up | 0.1431146116 |
| GSE9593 | Up | 0.2628106002 |
| GSE43922 | Down | -0.0102705516 |
| GSE24585 | Down | -0.6824485195 |
| GSE37065 | Down | -0.2619885705 |
| GSE28863_A1 | Down | -0.2829695856 |
| GSE28863_A2 | Down | -0.0053940089 |
| GSE28863_A3 | Down | -0.0367359794 |
| GSE28863_A4 | Up | 0.1309263883 |
| GSE48662 | Down | -0.0440031749 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1301-3p | MIMAT0005797 | MIRT036005 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041224 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-23a-3p | MIMAT0000078 | MIRT050419 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052139 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
