HCSGD entry for TRAFD1
1. General information
| Official gene symbol | TRAFD1 |
|---|---|
| Entrez ID | 10906 |
| Gene full name | TRAF-type zinc finger domain containing 1 |
| Other gene symbols | FLN29 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0034097 | Response to cytokine | IEA | biological_process |
| GO:0045824 | Negative regulation of innate immune response | IEA ISS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6927470955 | 0.2890207211 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0527369522 |
| GSE13712_SHEAR | Down | -0.3660746042 |
| GSE13712_STATIC | Up | 0.0391846903 |
| GSE19018 | Down | -0.1292908525 |
| GSE19899_A1 | Down | -0.0483686407 |
| GSE19899_A2 | Down | -0.1096227182 |
| PubMed_21979375_A1 | Down | -0.3661374498 |
| PubMed_21979375_A2 | Down | -0.0209454244 |
| GSE35957 | Up | 0.0900516104 |
| GSE36640 | Up | 0.2591027642 |
| GSE54402 | Down | -0.4535278375 |
| GSE9593 | Down | -0.0415781849 |
| GSE43922 | Up | 0.0001012681 |
| GSE24585 | Up | 0.0724680314 |
| GSE37065 | Up | 0.1908192330 |
| GSE28863_A1 | Down | -0.0322259991 |
| GSE28863_A2 | Up | 0.2204050076 |
| GSE28863_A3 | Down | -0.7389077393 |
| GSE28863_A4 | Up | 0.2149477238 |
| GSE48662 | Up | 0.3545929062 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018198 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029570 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039607 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040555 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-5p | MIMAT0000761 | MIRT043116 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-378a-3p | MIMAT0000732 | MIRT043867 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
