HCSGD entry for VAMP5
1. General information
| Official gene symbol | VAMP5 |
|---|---|
| Entrez ID | 10791 |
| Gene full name | vesicle-associated membrane protein 5 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000149 | SNARE binding | IBA | molecular_function |
| GO:0005484 | SNAP receptor activity | IBA | molecular_function |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005802 | Trans-Golgi network | IEA | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | IEA | cellular_component |
| GO:0006887 | Exocytosis | IBA | biological_process |
| GO:0006906 | Vesicle fusion | IBA | biological_process |
| GO:0007269 | Neurotransmitter secretion | IBA | biological_process |
| GO:0007517 | Muscle organ development | TAS | biological_process |
| GO:0007519 | Skeletal muscle tissue development | IEA | biological_process |
| GO:0008021 | Synaptic vesicle | IBA | cellular_component |
| GO:0012505 | Endomembrane system | IEA | cellular_component |
| GO:0030154 | Cell differentiation | IEA | biological_process |
| GO:0031201 | SNARE complex | IBA | cellular_component |
| GO:0043001 | Golgi to plasma membrane protein transport | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9791638426 | 0.0010569963 | 0.9999902473 | 0.0621008929 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2785860742 |
| GSE13712_SHEAR | Down | -0.2432056402 |
| GSE13712_STATIC | Down | -0.3378781989 |
| GSE19018 | Up | 0.1567026924 |
| GSE19899_A1 | Down | -0.9947914624 |
| GSE19899_A2 | Down | -2.1286573759 |
| PubMed_21979375_A1 | Down | -3.1121631761 |
| PubMed_21979375_A2 | Down | -2.1423511660 |
| GSE35957 | Down | -0.1600699267 |
| GSE36640 | Up | 0.0541608784 |
| GSE54402 | Down | -1.6692057057 |
| GSE9593 | Up | 0.3073397324 |
| GSE43922 | Down | -1.9899267934 |
| GSE24585 | Up | 0.0911764714 |
| GSE37065 | Up | 0.1625128288 |
| GSE28863_A1 | Down | -0.6105268117 |
| GSE28863_A2 | Down | -0.3943179951 |
| GSE28863_A3 | Down | -0.0536410772 |
| GSE28863_A4 | Down | -0.1249593233 |
| GSE48662 | Up | 0.4311206353 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018608 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
