HCSGD entry for POP4
1. General information
| Official gene symbol | POP4 |
|---|---|
| Entrez ID | 10775 |
| Gene full name | processing of precursor 4, ribonuclease P/MRP subunit (S. cerevisiae) |
| Other gene symbols | RPP29 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000172 | Ribonuclease MRP complex | IEA | cellular_component |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0004526 | Ribonuclease P activity | IEA | molecular_function |
| GO:0004540 | Ribonuclease activity | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005655 | Nucleolar ribonuclease P complex | IEA | cellular_component |
| GO:0006364 | RRNA processing | IEA | biological_process |
| GO:0006379 | MRNA cleavage | IEA | biological_process |
| GO:0008033 | TRNA processing | IEA | biological_process |
| GO:0030677 | Ribonuclease P complex | IEA | cellular_component |
| GO:0090501 | RNA phosphodiester bond hydrolysis | TAS | biological_process |
| GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2537183048 | 0.8562875575 | 0.9435037440 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3743569286 |
| GSE13712_SHEAR | Up | 0.0547936949 |
| GSE13712_STATIC | Up | 0.1145320130 |
| GSE19018 | Down | -0.2114039098 |
| GSE19899_A1 | Down | -0.1220361354 |
| GSE19899_A2 | Down | -0.1073223192 |
| PubMed_21979375_A1 | Up | 0.4378898468 |
| PubMed_21979375_A2 | Up | 0.4321857317 |
| GSE35957 | Down | -0.0465048790 |
| GSE36640 | Up | 0.0372873166 |
| GSE54402 | Up | 0.0338866173 |
| GSE9593 | Up | 0.0059677601 |
| GSE43922 | Up | 0.0360068443 |
| GSE24585 | Down | -0.3754386594 |
| GSE37065 | Up | 0.2062270531 |
| GSE28863_A1 | Up | 0.1464818616 |
| GSE28863_A2 | Up | 0.0563941706 |
| GSE28863_A3 | Up | 0.3671153438 |
| GSE28863_A4 | Up | 0.1657598384 |
| GSE48662 | Down | -0.1132715072 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-26b-5p | MIMAT0000083 | MIRT029286 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT045865 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049425 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
