HCSGD entry for PHTF1
1. General information
| Official gene symbol | PHTF1 |
|---|---|
| Entrez ID | 10745 |
| Gene full name | putative homeodomain transcription factor 1 |
| Other gene symbols | PHTF |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003700 | Sequence-specific DNA binding transcription factor activity | TAS | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IEA | cellular_component |
| GO:0005801 | Cis-Golgi network | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7288832795 | 0.1358684169 | 0.9999902473 | 0.7108313655 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1502307717 |
| GSE13712_SHEAR | Down | -0.1931693208 |
| GSE13712_STATIC | Up | 0.1228793542 |
| GSE19018 | Down | -0.1523756493 |
| GSE19899_A1 | Down | -0.0610872483 |
| GSE19899_A2 | Down | -0.4630747955 |
| PubMed_21979375_A1 | Down | -0.8005898457 |
| PubMed_21979375_A2 | Down | -0.7588887539 |
| GSE35957 | Down | -0.6307115185 |
| GSE36640 | Up | 0.7303216967 |
| GSE54402 | Up | 0.3175146735 |
| GSE9593 | Down | -0.2247592224 |
| GSE43922 | Down | -0.2255995582 |
| GSE24585 | Up | 0.3011468111 |
| GSE37065 | Up | 0.3400869659 |
| GSE28863_A1 | Down | -0.0764813555 |
| GSE28863_A2 | Up | 0.3569460563 |
| GSE28863_A3 | Down | -0.3328776625 |
| GSE28863_A4 | Down | -0.1490428500 |
| GSE48662 | Down | -0.1456569901 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024866 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026618 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030876 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040056 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-484 | MIMAT0002174 | MIRT042377 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050325 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
