HCSGD entry for USP39
1. General information
| Official gene symbol | USP39 |
|---|---|
| Entrez ID | 10713 |
| Gene full name | ubiquitin specific peptidase 39 |
| Other gene symbols | 65K HSPC332 SAD1 SNRNP65 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000245 | Spliceosomal complex assembly | TAS | biological_process |
| GO:0004221 | Ubiquitin thiolesterase activity | IEA | molecular_function |
| GO:0005681 | Spliceosomal complex | IEA | cellular_component |
| GO:0006397 | MRNA processing | TAS | biological_process |
| GO:0006511 | Ubiquitin-dependent protein catabolic process | IEA | biological_process |
| GO:0007049 | Cell cycle | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0051301 | Cell division | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9798695490 | 0.0471320998 | 0.9999902473 | 0.4075440210 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0311914856 |
| GSE13712_SHEAR | Down | -0.3207194452 |
| GSE13712_STATIC | Down | -0.1225561612 |
| GSE19018 | Down | -0.0082304784 |
| GSE19899_A1 | Down | -0.2186045236 |
| GSE19899_A2 | Down | -0.7779559427 |
| PubMed_21979375_A1 | Down | -0.7917795638 |
| PubMed_21979375_A2 | Down | -0.3804464986 |
| GSE35957 | Down | -0.2465178035 |
| GSE36640 | Down | -0.7074944259 |
| GSE54402 | Up | 0.0836916298 |
| GSE9593 | Up | 0.0797390878 |
| GSE43922 | Down | -0.0703837766 |
| GSE24585 | Up | 0.0129838343 |
| GSE37065 | Down | -0.0919082717 |
| GSE28863_A1 | Down | -0.0923909324 |
| GSE28863_A2 | Up | 0.3423862917 |
| GSE28863_A3 | Down | -0.6360441080 |
| GSE28863_A4 | Down | -0.0948978122 |
| GSE48662 | Down | -0.0729909907 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016575 | Microarray | Functional MTI (Weak) | 20304954 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
